View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14835_high_14 (Length: 240)

Name: NF14835_high_14
Description: NF14835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14835_high_14
NF14835_high_14
[»] chr1 (11 HSPs)
chr1 (1-224)||(15036461-15036684)
chr1 (1-224)||(15010441-15010664)
chr1 (1-224)||(15016556-15016779)
chr1 (1-224)||(15001548-15001771)
chr1 (1-224)||(15024558-15024781)
chr1 (1-224)||(15031899-15032122)
chr1 (18-194)||(14523089-14523265)
chr1 (1-161)||(14467307-14467467)
chr1 (18-221)||(15040200-15040403)
chr1 (18-179)||(14503468-14503629)
chr1 (3-161)||(14533195-14533353)
[»] scaffold0400 (2 HSPs)
scaffold0400 (22-224)||(5932-6134)
scaffold0400 (3-179)||(12265-12441)
[»] scaffold0365 (2 HSPs)
scaffold0365 (22-224)||(6576-6778)
scaffold0365 (3-179)||(12908-13084)
[»] chr7 (4 HSPs)
chr7 (79-209)||(16102338-16102468)
chr7 (79-209)||(16172016-16172146)
chr7 (106-203)||(17847993-17848090)
chr7 (97-161)||(17826625-17826689)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 15036684 - 15036461
Alignment:
1 tttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatttggagaaa 100  Q
    ||||||||||||||||||||||||||||| |||||  |||||||||||  |||||||||||||| ||||||||| |||||||||||||||||||||||||    
15036684 tttgttgctctgcctagttctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaa 15036585  T
101 gatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaag 200  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||    
15036584 gatgaccataaaaattattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttggttaag 15036485  T
201 cctcagtctcttaaggcttgagca 224  Q
    ||||| ||||| ||||||||||||    
15036484 cctcaatctctcaaggcttgagca 15036461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 15010664 - 15010441
Alignment:
1 tttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatttggagaaa 100  Q
    |||||||| || ||||||||||||||||| |||||| |||||||||||   ||||||||||||| ||||||| | |||||||||||||||||||||||||    
15010664 tttgttgcacttcctagttctggtggtattcttcctgttaaattattaccagagatttttaggcttgtgagaatcttgcactttccccaatttggagaaa 15010565  T
101 gatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaag 200  Q
    ||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
15010564 gatgaccataaaaattattatcactcaattccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtaagttggttttgatcaag 15010465  T
201 cctcagtctcttaaggcttgagca 224  Q
    |||||||||| |||||||||||||    
15010464 cctcagtctcgtaaggcttgagca 15010441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 15016779 - 15016556
Alignment:
1 tttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatttggagaaa 100  Q
    |||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| |||| ||||||||| |||||||||||||||||||||||||    
15016779 tttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaa 15016680  T
101 gatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaag 200  Q
      |||||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||| | |||||||||||| |||||||||||||| |||||    
15016679 tttgaccatacaaattattatcactcaattccatgtagtccaagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgttcaag 15016580  T
201 cctcagtctcttaaggcttgagca 224  Q
    ||||||||||||||||||||||||    
15016579 cctcagtctcttaaggcttgagca 15016556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 15001771 - 15001548
Alignment:
1 tttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatttggagaaa 100  Q
    |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||    
15001771 tttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagatttttaggcttgtgagattcttgcactttccccaatttggagaaa 15001672  T
101 gatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaag 200  Q
    ||||||||||||||||||||||||| || |||||||| | ||| ||||||||||||||||| || |||||||||||||| |||||||||||||| | |||    
15001671 gatgaccataaaaattattatcactcaaatccatgtattccaaatttggatacacaccaaagctgtctgttatatttccagtcagttggttttgttgaag 15001572  T
201 cctcagtctcttaaggcttgagca 224  Q
     |||| |||| |||||||||||||    
15001571 tctcactctcgtaaggcttgagca 15001548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 15024781 - 15024558
Alignment:
1 tttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatttggagaaa 100  Q
    |||||||| |||||||| ||||||||||| |||||| |||||||||||   |||||||| |||| ||||||||| |||||||||||||||||||||||||    
15024781 tttgttgcgctgcctagctctggtggtattcttcctgttaaattattaccagagattttaaggcttgtgagattcttgcactttccccaatttggagaaa 15024682  T
101 gatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaag 200  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||    
15024681 gatgaccataaaaattattatcattcaagtccatgtagtacaagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgatcaag 15024582  T
201 cctcagtctcttaaggcttgagca 224  Q
    ||||| ||| ||||||||| ||||    
15024581 cctcactcttttaaggcttaagca 15024558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 15032122 - 15031899
Alignment:
1 tttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatttggagaaa 100  Q
    |||||||| |||||||| ||||||||||| |||||| |||||||||||   |||||||| |||| ||||||||| |||||||||||||||||||||||||    
15032122 tttgttgcgctgcctagctctggtggtattcttcctgttaaattattaccagagattttaaggcttgtgagattcttgcactttccccaatttggagaaa 15032023  T
101 gatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaag 200  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||    
15032022 gatgaccataaaaattattatcattcaagtccatgtagtacaagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgatcaag 15031923  T
201 cctcagtctcttaaggcttgagca 224  Q
    ||||| ||| ||||||||| ||||    
15031922 cctcactcttttaaggcttaagca 15031899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 14523089 - 14523265
Alignment:
18 ttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatttggagaaagatgaccataaaaatta 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||| ||||||||||||||||||| |||||||||||||    
14523089 ttctggtggtatgcttcctattaaattattattggagattttaaggcttgtcagattcttgcacttcccccaatttggagaaagataaccataaaaatta 14523188  T
118 ttatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttg 194  Q
    ||||||||||| || ||||||| ||| |||||||||||||||||||| |||||||||||||| |||| || ||||||    
14523189 ttatcacttaattctatgtagtccaaatttggatacacaccaaaactatctgttatatttcctgtcattttgttttg 14523265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 14467467 - 14467307
Alignment:
1 tttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatttggagaaa 100  Q
    |||||||||| |||||||||||| |||||||||||| ||||||| |||||| ||||||| |||| |||||||||  |||| ||||||||||| || || |    
14467467 tttgttgctcggcctagttctggcggtatgcttcctgttaaattgttattgaagattttaaggcatgtgagattcatgcattttccccaattcggtgata 14467368  T
101 gatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaa 161  Q
    |||| ||||| |||||||||||||| || |||||||||| ||| ||||||| ||| |||||    
14467367 gatggccatacaaattattatcactcaattccatgtagtccaattttggatgcacgccaaa 14467307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 15040403 - 15040200
Alignment:
18 ttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatttggagaaagatgaccataaaaatta 117  Q
    |||| ||||||| || ||| |||||||||| ||||||||||| |||| | ||||||| ||||  ||||||||||| || |||| ||| ||| || | |||    
15040403 ttctagtggtatactccctgttaaattattgttggagattttaaggcttatgagattcttgcgttttccccaattaggtgaaatatggccaaaatattta 15040304  T
118 ttatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggc 217  Q
    ||| |||| || ||||||||||||||||||||| |||||||||| || |||||||||||||| |  ||||||||||| ||||| |||| |||||| || |    
15040303 ttaccactcaattccatgtagtacaagtttggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaagtctcactctctttagac 15040204  T
218 ttga 221  Q
    ||||    
15040203 ttga 15040200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 14503629 - 14503468
Alignment:
18 ttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatttggagaaagatgaccataaaaatta 117  Q
    |||| |||||||  ||||| ||||||| |||||||||||||| |||| ||||||| | |||||||||||||||||||| || ||||| ||||| ||||||    
14503629 ttcttgtggtatatttcctgttaaattgttattggagattttaaggcttgtgagactcttgcactttccccaatttggtgatagatggccatacaaatta 14503530  T
118 ttatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcc 179  Q
    || ||||| || |||||||||| ||| | |||||| ||||||||||  ||||||||||||||    
14503529 ttttcactcaattccatgtagtccaaatgtggataaacaccaaaaccatctgttatatttcc 14503468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 14533195 - 14533353
Alignment:
3 tgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatttggagaaaga 102  Q
    ||||||||  ||||||||| | |||||||||||  |||||||||| ||||||||||  || | |||||| || |||||||| ||||||||||| || | |    
14533195 tgttgctccacctagttcttgaggtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatttggtgatata 14533294  T
103 tgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaa 161  Q
    || |||||||||||||||||||| || |||||||||| ||| ||||||||||| |||||    
14533295 tggccataaaaattattatcactcaattccatgtagtccaaatttggatacacgccaaa 14533353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 6134 - 5932
Alignment:
22 ggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatttggagaaagatgaccataaaaattattat 121  Q
    |||||||||||||||  || |||||||||| | | ||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
6134 ggtggtatgcttcctgatatattattattgaaaactttaaggcttgtgagattcttgcactttccccaatttggagagagatgaccataaaaattattat 6035  T
122 cacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttga 221  Q
    |||| || ||||| || | ||| || |||||||||||||| || |||||||||||| | |||||||||||||| | ||| |||| |||||||||||||||    
6034 cactcaattccatatattccaaattcggatacacaccaaagctatctgttatatttgcagtcagttggttttgttgaagtctcactctcttaaggcttga 5935  T
222 gca 224  Q
    |||    
5934 gca 5932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 12441 - 12265
Alignment:
3 tgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatttggagaaaga 102  Q
    ||||||||  ||||||||| | |||||||||||  |||||||||| ||||||||||  || | |||||| || |||||||| ||||||||||| || | |    
12441 tgttgctccacctagttcttgcggtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatttggtgatata 12342  T
103 tgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcc 179  Q
    || ||||||||||||||||||||||| |||||||||  ||| | |||||| ||||||||||  ||||||||||||||    
12341 tggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaccatctgttatatttcc 12265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 6778 - 6576
Alignment:
22 ggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatttggagaaagatgaccataaaaattattat 121  Q
    |||||||||||||||  || |||||||||| | | ||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
6778 ggtggtatgcttcctgatatattattattgaaaactttaaggcttgtgagattcttgcactttccccaatttggagagagatgaccataaaaattattat 6679  T
122 cacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttga 221  Q
    |||| || ||||| || | ||| || |||||||||||||| || |||||||||||| | |||||||||||||| | ||| |||| |||||||||||||||    
6678 cactcaattccatatattccaaattcggatacacaccaaagctatctgttatatttgcagtcagttggttttgttgaagtctcactctcttaaggcttga 6579  T
222 gca 224  Q
    |||    
6578 gca 6576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 13084 - 12908
Alignment:
3 tgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatttggagaaaga 102  Q
    ||||||||  ||||||||| | |||||||||||  |||||||||| ||||||||||  || | |||||| || |||||||| ||||||||||| || | |    
13084 tgttgctccacctagttcttgcggtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatttggtgatata 12985  T
103 tgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcc 179  Q
    || ||||||||||||||||||||||| |||||||||  ||| | |||||| ||||||||||  ||||||||||||||    
12984 tggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaccatctgttatatttcc 12908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 16102468 - 16102338
Alignment:
79 cactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttc 178  Q
    |||||||||||||| |  ||||| || || |||||||| || ||||||||||| ||||| | ||| |||||||| |||| ||||   | |||||||||||    
16102468 cactttccccaattcgatgaaaggtgtccgtaaaaattgttttcacttaagtctatgtaattcaaatttggataaacactaaaatcttgtgttatatttc 16102369  T
179 ccgtcagttggttttgatcaagcctcagtct 209  Q
    | || ||||||||||| ||||| || |||||    
16102368 cagtaagttggttttggtcaagtctaagtct 16102338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 16172146 - 16172016
Alignment:
79 cactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttc 178  Q
    |||||||||||||| |  ||||| || || |||||||| || ||||||||||| ||||| | ||| |||||||| |||| ||||   | |||||||||||    
16172146 cactttccccaattcgatgaaaggtgtccgtaaaaattgttttcacttaagtctatgtaattcaaatttggataaacactaaaatcttgtgttatatttc 16172047  T
179 ccgtcagttggttttgatcaagcctcagtct 209  Q
    | || ||||||||||| ||||| || |||||    
16172046 cagtaagttggttttggtcaagtctaagtct 16172016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 17848090 - 17847993
Alignment:
106 ccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcct 203  Q
    |||||||||||||| | ||| || | |||||| | ||| || ||||||||||||||    |||||||||||||| |  ||||||||||| ||||||||    
17848090 ccataaaaattattttgactcaaatgcatgtaatccaaattcggatacacaccaaagaaatctgttatatttccagaaagttggttttgttcaagcct 17847993  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 17826625 - 17826689
Alignment:
97 gaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaa 161  Q
    ||||| || |||||||||| ||| ||||| || | |||||||||||| ||||||| |||||||||    
17826625 gaaaggtggccataaaaatgattttcactcaactgcatgtagtacaaatttggatgcacaccaaa 17826689  T

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