View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14835_high_2 (Length: 426)

Name: NF14835_high_2
Description: NF14835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14835_high_2
NF14835_high_2
[»] chr1 (1 HSPs)
chr1 (13-426)||(44798734-44799147)


Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Complemental strand, 44799147 - 44798734
Alignment:
Q  13 agcagagaaaccaacatgcataaactctttaaatctctcagaaagatcaatgaatgaagcaataattggtgttggaggtctagttgaagagtaactaacc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44799147 agcagagaaaccaacatgcataaactctttaaatctctcagaaagatcaatgaatgaagcaataattggtgttggaggtctagttgaagagtaactaacc 44799048  T
Q  113 caaacacgaaccattttcatatcatctctatactcaatccatgcattgatgattttcccacttttcaaatcaatccgacgtgaaagaagatcagcagaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44799047 caaacacgaaccattttcatatcatctctatactcaatccatgcattgatgattttcccacttttcaaatcaatccgacgtgaaagaagatcagcagaag 44798948  T
Q  213 caaaagaaacaacactgccaagatcaataccaacgtggtttccattaatgtcaccaagagaaggatcaaaacttgtatcaaattcaaccgcaaagtaaga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44798947 caaaagaaacaacactgccaagatcaataccaacgtggtttccattaatgtcaccaagagaaggatcaaaactcgtatcaaattcaaccgcaaagtaaga 44798848  T
Q  313 atcttgatcagaatgaggaaggcccatgtaaccattagagagagacgagaaatcagtggttgatgaaatgagaaaagcaatgccatcggaagaagaagga 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44798847 atcttgatcagaatgaggaaggcccatgtaaccattagagagagacgagaaatcagtggttgatgaaatgagaaaagcaatgccatcggaagaagaagga 44798748  T
Q  413 caagaaggtgaaga 426  Q
    ||||||||||||||    
T  44798747 caagaaggtgaaga 44798734  T

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