View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14835_high_3 (Length: 377)
Name: NF14835_high_3
Description: NF14835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14835_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 363
Target Start/End: Original strand, 40311400 - 40311754
Alignment:
| Q |
10 |
gagaagaaggatcaaaagaaaaatgttgaagaagttccaactggttatatccatgtcagagcaagaaggggtcaggcaacagatagccacagccttgctg |
109 |
Q |
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| T |
40311400 |
gagaagaaggatcaaaagaaaaatgttgaagaagttccaactggttatatccatgtcagagcaagaaggggtcaggcaacagatagccacagccttgctg |
40311499 |
T |
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| Q |
110 |
aaagggtatgcaatacagtttttacctatgaagccctaacagggacacaaacgccgaatgtaataacatg-tgttaatgtgtagccggacaaaagtgtcg |
208 |
Q |
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| T |
40311500 |
aaagggtatgcaatacagtttttacctatgaagccctaacacggacacaaacgccgaatgtaataacatgccgttagtgtgtagccggacaaaagtgtcg |
40311599 |
T |
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| Q |
209 |
gagctacttaggttattacaatttacaactgaaagggaattcctcaattgcctcaaagttcatgtctcattgttaataaatgttgcnnnnnnnntggatt |
308 |
Q |
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| T |
40311600 |
gagctacttaggttattacaatttacaactgaaagggaattcctcaattgcctcaaagttcatgtctcattgttaataattgttgcaaaaaaaatggatt |
40311699 |
T |
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| Q |
309 |
tcaggtgagaagagagaaaataagtgaaagaatgaagatattgcagcaacttgtg |
363 |
Q |
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| T |
40311700 |
tcaggtgagaagagagaaaataagtgaaagaatgaagatattgcagcaacttgtg |
40311754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 45175752 - 45175823
Alignment:
| Q |
46 |
ccaactggttatatccatgtcagagcaagaaggggtcaggcaacagatagccacagccttgctgaaagggta |
117 |
Q |
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| T |
45175752 |
ccaactggctatatccacgtccgagcaagaaggggtcaggccactgatagccacagccttgctgaaagggta |
45175823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 363
Target Start/End: Original strand, 45175953 - 45176008
Alignment:
| Q |
308 |
ttcaggtgagaagagagaaaataagtgaaagaatgaagatattgcagcaacttgtg |
363 |
Q |
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| T |
45175953 |
ttcaggtaagaagagagaaaataagtgaaaggatgaagaagttgcagcaacttgtg |
45176008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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