View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14835_low_14 (Length: 273)
Name: NF14835_low_14
Description: NF14835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14835_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 34577723 - 34577980
Alignment:
| Q |
1 |
tttttatcttttaagaaagtctacttgccttggtttactgcaataacttctgagttgcttatcaattcatatgtcgtattatccattgcttgaatattac |
100 |
Q |
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| T |
34577723 |
tttttatctcttaagaaagtctacttgccttggtttactgcaataacttctgagttgcttatcaattcatatgtggtattatccattgcttgaatattac |
34577822 |
T |
|
| Q |
101 |
atccaactaataaaggagcctatttaaaccaataaaaatagttaaacgacaaacttatgacatatacattacattgtct---caatatgtatagaaaaag |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||||| |||||| |
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| T |
34577823 |
atccaactaataaaggagcctatttaaaccaataaaaatagttaaacgacaaacttatgacatatatattgcagtgtctcaacaatatgtatataaaaag |
34577922 |
T |
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| Q |
198 |
tgtttcatgtaccttagctaatgcccaaatgctaaaatgggcacgatattcctctgtg |
255 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34577923 |
tgtttcatgtaccttagctaatgcccaaatgctgaaatgggcacgatattcctctgtg |
34577980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 34593535 - 34593630
Alignment:
| Q |
28 |
ccttggtttactgcaataacttctgagttgcttatcaattcatatgtcgtattatccattgcttgaatattacatccaactaataaaggagcctat |
123 |
Q |
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| T |
34593535 |
ccttggtttactgcaataacttccgagttagttattaattcatatgtggtattatccattgcacgaatatcacaaccaaccaataaaggagcctat |
34593630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 32589962 - 32590219
Alignment:
| Q |
7 |
tcttttaagaaagtctacttgccttggtttactgcaataacttctgagttgcttatcaattcatatgtcgtattatccattgcttgaatattacatccaa |
106 |
Q |
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| T |
32589962 |
tctttcaagaaagtctacttaccttggtttactgcaataacttcagagttgcttatcaattcatacgtgatattatccattgcttgaatattacaaccaa |
32590061 |
T |
|
| Q |
107 |
ctaataaaggagcctatttaa-----accaataaaaatagttaaacga--caaacttatgacatatacattacattgtctcaa---tatgtatagaaaaa |
196 |
Q |
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|||||||||| |||||||||| ||||| |||||||||||| | |||| | |||||||||| ||||| ||||||||| || ||||| ||||| |
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| T |
32590062 |
ctaataaaggggcctatttaatttaaaccaaataaaatagttaaaaaaaacaaattaatgacatatatattactttgtctcaacaataggtatataaaaa |
32590161 |
T |
|
| Q |
197 |
gtgtttcatgtaccttagctaatgcccaaatgctaaaatgggcacgatattcctctgt |
254 |
Q |
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| T |
32590162 |
ttatttcatgcaccttagctaatgcccagatgctgaaatgggaacgatattcctctgt |
32590219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 32600410 - 32600667
Alignment:
| Q |
7 |
tcttttaagaaagtctacttgccttggtttactgcaataacttctgagttgcttatcaattcatatgtcgtattatccattgcttgaatattacatccaa |
106 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| |||| |
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| T |
32600410 |
tctttcaagaaagtctacttaccttggtttactgcaataacttcagagttgcttatcaattcatacgtgatattatccattgcttgaatattacaaccaa |
32600509 |
T |
|
| Q |
107 |
ctaataaaggagcctatttaa-----accaataaaaatagttaaacga--caaacttatgacatatacattacattgtctcaa---tatgtatagaaaaa |
196 |
Q |
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|||||||||| |||||||||| ||||| |||||||||||| | |||| | |||||||||| ||||| ||||||||| || ||||| ||||| |
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| T |
32600510 |
ctaataaaggggcctatttaatttaaaccaaataaaatagttaaaaaaaacaaattaatgacatatatattactttgtctcaacaataggtatataaaaa |
32600609 |
T |
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| Q |
197 |
gtgtttcatgtaccttagctaatgcccaaatgctaaaatgggcacgatattcctctgt |
254 |
Q |
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| T |
32600610 |
ttatttcatgcaccttagctaatgcccagatgctgaaatgggaacgatattcctctgt |
32600667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 24883773 - 24883727
Alignment:
| Q |
208 |
accttagctaatgcccaaatgctaaaatgggcacgatattcctctgt |
254 |
Q |
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|||||| |||||||||| ||||| ||||||||||||||||| ||||| |
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| T |
24883773 |
accttaactaatgcccatatgctgaaatgggcacgatattcttctgt |
24883727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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