View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14835_low_15 (Length: 271)
Name: NF14835_low_15
Description: NF14835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14835_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 17504530 - 17504773
Alignment:
| Q |
1 |
ttgtcatcgtgtaatctgtgactgattgtaattccacccacatgtttgtaaccaacattaattctacccgtgcattgcacatgcaacacactagttaaat |
100 |
Q |
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| T |
17504530 |
ttgtcatcgcgtaatctgtgattgattgtaattccacccacatgtttgtaaccaacgttaattctacccgtgcatcgcacaggcaacacactagttaaat |
17504629 |
T |
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| Q |
101 |
atacactttaaaactctttaaaactaaagaaatgaagaggtgtcatttaaatgtaactcgcattgtaagctctatgaacattaatgatatgcatggattg |
200 |
Q |
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| T |
17504630 |
atacactttaaaactctttaaaacttaaga----aagaggtggcatttaaatgtaactcggatggtaagctctatgaacattaatgatatgcatggatcg |
17504725 |
T |
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| Q |
201 |
agattcgaacctcgaattctccacacttaaaatgtgtgagtctaacta |
248 |
Q |
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| T |
17504726 |
agattcgaacctcgaattctccacacttaaaatgtgtgagtctaacta |
17504773 |
T |
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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 18034286 - 18034378
Alignment:
| Q |
3 |
gtcatcgtgtaatctgtgactgattgtaattccacccacatgtttgtaaccaacattaattctacccgtgcattgcacatgcaacacactagt |
95 |
Q |
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| T |
18034286 |
gtcatcgtgtaatatgtgaccgattgtaattccacccactcgtctgtaatcaacgttaattctactcgtgcatcgcacgggcaacacactagt |
18034378 |
T |
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