View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14835_low_17 (Length: 251)

Name: NF14835_low_17
Description: NF14835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14835_low_17
NF14835_low_17
[»] chr1 (10 HSPs)
chr1 (1-240)||(15010642-15010881)
chr1 (1-240)||(15001749-15001988)
chr1 (1-234)||(15036662-15036895)
chr1 (1-229)||(15024759-15024987)
chr1 (1-229)||(15032100-15032328)
chr1 (1-234)||(15016757-15016990)
chr1 (22-227)||(14503645-14503850)
chr1 (1-227)||(14467445-14467671)
chr1 (3-227)||(14532989-14533213)
chr1 (38-227)||(14522868-14523057)
[»] scaffold0400 (2 HSPs)
scaffold0400 (3-227)||(12423-12647)
scaffold0400 (113-215)||(6245-6347)
[»] scaffold0365 (2 HSPs)
scaffold0365 (3-227)||(13066-13290)
scaffold0365 (113-215)||(6889-6991)
[»] chr7 (1 HSPs)
chr7 (38-161)||(15677392-15677515)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15010642 - 15010881
Alignment:
Q  1 ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgt 100  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15010642 ccagaactaggaagtgcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgt 15010741  T
Q  101 tcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15010742 tcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataattt 15010841  T
Q  201 gagtggcttcatccctaaaaaacttggtatgttgcctatg 240  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  15010842 gagtggcttcatccctaaaaaacttggtatgttgtctatg 15010881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15001749 - 15001988
Alignment:
Q  1 ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||     
T  15001749 ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgcgaaaaattccaaaggagttagaaaacttatctttgttga 15001848  T
Q  101 tcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataattt 200  Q
    |||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15001849 tcaaactctcgttaagtaacaatcatctttatggagaagttccagtacaaattgcatcattgcatcaactaactgcattggagcttgcaacaaataattt 15001948  T
Q  201 gagtggcttcatccctaaaaaacttggtatgttgcctatg 240  Q
    |||||| ||||||||| ||||||||||||||||| |||||    
T  15001949 gagtggattcatccctgaaaaacttggtatgttgtctatg 15001988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 15036662 - 15036895
Alignment:
Q  1 ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||    
T  15036662 ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaacgatctaatgggaaaaattccaaaggagctaaaatatttatctttgttgt 15036761  T
Q  101 tcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataattt 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  15036762 tcaaactctcgttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaacaaataactt 15036861  T
Q  201 gagtggcttcatccctaaaaaacttggtatgttg 234  Q
     |||||||||||||   |||||||||||||||||    
T  15036862 aagtggcttcatcctggaaaaacttggtatgttg 15036895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 15024759 - 15024987
Alignment:
Q  1 ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgt 100  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||     
T  15024759 ccagagctaggcagcgcaacaaatttacaggagcttaacttgtcttcaaaccatctaacgggaaaaattccaaaggagctagaaaacttatctttgttga 15024858  T
Q  101 tcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataattt 200  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||| |||||||||    
T  15024859 tcaaactctcgttaagtaacaatcacctttctggagaagttcctgtacaaattgcatcattgcacgagctaactgcattggagcttgcaacaaataattt 15024958  T
Q  201 gagtggcttcatccctaaaaaacttggta 229  Q
    |||||||||||||||||||| ||||||||    
T  15024959 gagtggcttcatccctaaaagacttggta 15024987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 15032100 - 15032328
Alignment:
Q  1 ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgt 100  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||     
T  15032100 ccagagctaggcagcgcaacaaatttacaggagcttaacttgtcttcaaaccatctaacgggaaaaattccaaaggagctagaaaacttatctttgttga 15032199  T
Q  101 tcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataattt 200  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||| |||||||||    
T  15032200 tcaaactctcgttaagtaacaatcacctttctggagaagttcctgtacaaattgcatcattgcacgagctaactgcattggagcttgcaacaaataattt 15032299  T
Q  201 gagtggcttcatccctaaaaaacttggta 229  Q
    |||||||||||||||||||| ||||||||    
T  15032300 gagtggcttcatccctaaaagacttggta 15032328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 15016757 - 15016990
Alignment:
Q  1 ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgt 100  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||| ||||||||||||||| ||||| ||||||||||||||     
T  15016757 ccagaactaggcagagcaacaaatttacatgaacttaacttgtcttcaaaccatcttacggggaaaattccaaaggagctagaaaacttatctttgttga 15016856  T
Q  101 tcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataattt 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||  || ||||||||||||||||||||  |||||||||    
T  15016857 tcaaactctcgttaagtaacaatcatctttctggagaagttcctgaacaaattgaatcattgcacgaattaactgcattggagcttgcagcaaataattt 15016956  T
Q  201 gagtggcttcatccctaaaaaacttggtatgttg 234  Q
     ||||||||||||||| |||||||||||||||||    
T  15016957 cagtggcttcatccctgaaaaacttggtatgttg 15016990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 227
Target Start/End: Original strand, 14503645 - 14503850
Alignment:
Q  22 aatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttcaaactctccttaagtaaca 121  Q
    |||||||| || ||||||||||| ||||||||||| |  |||||||||||||||||  ||| | |||| ||||||||| ||||||||||  |||||||||    
T  14503645 aatttacatgaacttaacttgtcatcaaaccatcttactggaaaaattccaaaggatctaggaaacttgtctttgttgatcaaactctcgataagtaaca 14503744  T
Q  122 atcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaa 221  Q
    |||||||||||||||| |||||| |||||||||||||||||||   ||||||| | ||||||||||||| ||||||||| |||||||||||||||| ||     
T  14503745 atcatctttctggagaggttcctatacaaattgcatcattgcaagcactaactaccttggagcttgcaacaaataatttaagtggcttcatccctagaag 14503844  T
Q  222 acttgg 227  Q
    ||||||    
T  14503845 acttgg 14503850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 14467445 - 14467671
Alignment:
Q  1 ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgt 100  Q
    |||||||||||| |||||||||||||||| || || ||| |||||||||||||||| | ||||||||||||||||||| |||||  |||||||||||||     
T  14467445 ccagaactaggccgagcaacaaatttacatgaactaaacctgtcttcaaaccatcttacgggaaaaattccaaaggagctagaaagcttatctttgttga 14467544  T
Q  101 tcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataattt 200  Q
    || |||||||  ||||||||||||||||||| ||||||||||||| |||| |||||||||||||  |||||  | | ||||||||| ||| |||||||||    
T  14467545 tccaactctcggtaagtaacaatcatctttcaggagaagttcctgcacaagttgcatcattgcaaaaactagataccttggagctttcaacaaataattt 14467644  T
Q  201 gagtggcttcatccctaaaaaacttgg 227  Q
     ||||| |  ||||| ||| |||||||    
T  14467645 aagtggttcaatcccaaaacaacttgg 14467671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 14533213 - 14532989
Alignment:
Q  3 agaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttc 102  Q
    |||||||||  |||||||| | ||||| || |||||  |||||||||||||||| |  |||||||||||| ||||| ||| | |||||||||||||  ||    
T  14533213 agaactaggtggagcaacacaattacaagaacttaatctgtcttcaaaccatcttactggaaaaattccagaggagctaggaaacttatctttgttaatc 14533114  T
Q  103 aaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttga 202  Q
    ||||||||  ||| ||||||| ||||||  ||||||||||||||||||||||||||| ||||   ||||||||| |||||||||| || ||||||||| |    
T  14533113 aaactctcgataaataacaataatcttttgggagaagttcctgtacaaattgcatcactgcaggcactaactgccttggagcttgaaaaaaataatttaa 14533014  T
Q  203 gtggcttcatccctaaaaaacttgg 227  Q
    ||||||||||||||| || ||||||    
T  14533013 gtggcttcatccctagaagacttgg 14532989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 227
Target Start/End: Complemental strand, 14523057 - 14522868
Alignment:
Q  38 acttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttcaaactctccttaagtaacaatcatctttctggaga 137  Q
    ||||||| ||||| || || || |||||||||||||||||  ||| | ||||||||    || || |||||||  ||||||| ||||||||||| |||||    
T  14523057 acttgtcctcaaatcaacttataggaaaaattccaaaggatctaggaaacttatctgcactgatccaactctcgataagtaataatcatctttcgggaga 14522958  T
Q  138 agttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaaacttgg 227  Q
    ||||||| | || ||||||||||||||| |||||||| ||||||| ||||||| ||||||||| ||||| || |||||| ||||||||||    
T  14522957 agttcctatgcagattgcatcattgcatgaactaactacattggatcttgcaacaaataatttaagtggttttatccctgaaaaacttgg 14522868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 12423 - 12647
Alignment:
Q  3 agaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttc 102  Q
    |||||||||  |||||||| | ||||| || |||||  |||||||||||||||| |  |||||||||||||||||| ||| | |||||||||||||  ||    
T  12423 agaactaggtggagcaacacaattacaagaacttaatctgtcttcaaaccatcttactggaaaaattccaaaggagctaggaaacttatctttgttaatc 12522  T
Q  103 aaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttga 202  Q
    ||||||||  ||| ||||||| ||||||  ||||||||||||||||||||||||||| ||||   ||||||||| |||||||||| || ||||||||| |    
T  12523 aaactctcgataaataacaataatcttttgggagaagttcctgtacaaattgcatcactgcaggcactaactgccttggagcttgaaaaaaataatttaa 12622  T
Q  203 gtggcttcatccctaaaaaacttgg 227  Q
    ||||||||||||||| || ||||||    
T  12623 gtggcttcatccctagaagacttgg 12647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 113 - 215
Target Start/End: Original strand, 6245 - 6347
Alignment:
Q  113 taagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttgagtggcttcat 212  Q
    |||||| ||||||||||   ||||||||||||| ||||||||||| ||||||| || |||||   ||||||||||||| ||||||||| |||||||||||    
T  6245 taagtagcaatcatcttgtaggagaagttcctgaacaaattgcattattgcataaaataactatcttggagcttgcaacaaataatttcagtggcttcat 6344  T
Q  213 ccc 215  Q
    |||    
T  6345 ccc 6347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 13066 - 13290
Alignment:
Q  3 agaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttc 102  Q
    |||||||||  |||||||| | ||||| || |||||  |||||||||||||||| |  |||||||||||||||||| ||| | |||||||||||||  ||    
T  13066 agaactaggtggagcaacacaattacaagaacttaatctgtcttcaaaccatcttactggaaaaattccaaaggagctaggaaacttatctttgttaatc 13165  T
Q  103 aaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttga 202  Q
    ||||||||  ||| ||||||| ||||||  ||||||||||||||||||||||||||| ||||   ||||||||| |||||||||| || ||||||||| |    
T  13166 aaactctcgataaataacaataatcttttgggagaagttcctgtacaaattgcatcactgcaggcactaactgccttggagcttgaaaaaaataatttaa 13265  T
Q  203 gtggcttcatccctaaaaaacttgg 227  Q
    ||||||||||||||| || ||||||    
T  13266 gtggcttcatccctagaagacttgg 13290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 113 - 215
Target Start/End: Original strand, 6889 - 6991
Alignment:
Q  113 taagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttgagtggcttcat 212  Q
    |||||| ||||||||||   ||||||||||||| ||||||||||| ||||||| || |||||   ||||||||||||| ||||||||| |||||||||||    
T  6889 taagtagcaatcatcttgtaggagaagttcctgaacaaattgcattattgcataaaataactatcttggagcttgcaacaaataatttcagtggcttcat 6988  T
Q  213 ccc 215  Q
    |||    
T  6989 ccc 6991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 15677515 - 15677392
Alignment:
Q  38 acttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttcaaactctccttaagtaacaatcatctttctggaga 137  Q
    |||| |||||||||||||| || || |||||||||||||||||||   ||||  || |||||   | |||||  ||||| ||||| |||||||||||  |    
T  15677515 acttatcttcaaaccatcttattggtaaaattccaaaggagttaggcaacttgactatgttgggtagactctatttaagcaacaaccatctttctggtaa 15677416  T
Q  138 agttcctgtacaaattgcatcatt 161  Q
     ||||| |||||||||||||||||    
T  15677415 tgttccggtacaaattgcatcatt 15677392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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