View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14835_low_19 (Length: 234)

Name: NF14835_low_19
Description: NF14835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14835_low_19
NF14835_low_19
[»] chr1 (18 HSPs)
chr1 (10-214)||(11032860-11033055)
chr1 (10-161)||(11007451-11007602)
chr1 (10-177)||(10993942-10994109)
chr1 (10-213)||(11005258-11005461)
chr1 (18-213)||(10901324-10901519)
chr1 (10-131)||(10979077-10979198)
chr1 (10-131)||(11010643-11010764)
chr1 (10-131)||(10914342-10914463)
chr1 (58-131)||(11028893-11028966)
chr1 (10-131)||(10903182-10903303)
chr1 (10-131)||(10932722-10932844)
chr1 (34-97)||(9234322-9234385)
chr1 (34-97)||(9384009-9384072)
chr1 (56-97)||(9255310-9255351)
chr1 (56-97)||(9318572-9318613)
chr1 (56-97)||(9319689-9319730)
chr1 (56-97)||(9350006-9350047)
chr1 (170-211)||(11007416-11007457)
[»] chr6 (1 HSPs)
chr6 (49-97)||(15927471-15927519)


Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 11033055 - 11032860
Alignment:
Q  10 aagaatatgatgatagtggctttgtggtgtattcaggcgaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaagaagaagatgaag 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||    
T  11033055 aagaaaatgatgatagtggctttgtggtgtattcaggcgaaacctagtgatcgtcctccaatggataaagtgttggagatgcttgaagaagaagatgaag 11032956  T
Q  110 atttgcaaatgcctaataagcccaacttttatgcacatgatgtacaagatgaggatgctagagatgattggactggtagttcatggtattcctctggtac 209  Q
    ||||||||||||||||||||||  |||         || ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||    
T  11032955 atttgcaaatgcctaataagcctgact---------attatgtacaagatgaggatactagagatgatagaactggtagttcatggtattcctctggtac 11032865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 11007602 - 11007451
Alignment:
Q  10 aagaatatgatgatagtggctttgtggtgtattcaggcgaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaagaagaagatgaag 109  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||    
T  11007602 aagaaaatgatgatagtggctttgtggtgtattcaagcgaaacctagtgatcgtcctccaatggataaagtgttggagatgcttgaagaagaagatgaag 11007503  T
Q  110 atttgcaaatgcctaataagcccaacttttatgcacatgatgtacaagatga 161  Q
    ||||||||||||||||| ||||  || || ||||||| || |||| ||||||    
T  11007502 atttgcaaatgcctaatcagcctgaccttgatgcacaagacgtacgagatga 11007451  T

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Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 10 - 177
Target Start/End: Original strand, 10993942 - 10994109
Alignment:
Q  10 aagaatatgatgatagtggctttgtggtgtattcaggcgaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaagaagaagatgaag 109  Q
    ||||| |||||||| ||||| || |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  10993942 aagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaagaagaagatgggg 10994041  T
Q  110 atttgcaaatgcctaataagcccaacttttatgcacatgatgtacaagatgaggatgctagagatgat 177  Q
    ||||||||||||||||||||||  || ||||| |||| ||| ||| ||  || |||| ||||||||||    
T  10994042 atttgcaaatgcctaataagccttacctttatccacaagatataccagcagacgatgttagagatgat 10994109  T

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Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 11005258 - 11005461
Alignment:
Q  10 aagaatatgatgatagtggctttgtggtgtattcaggcgaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaagaagaagatgaag 109  Q
    ||||| |||||||| |||||||| |||||||| ||| | |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  11005258 aagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgattgagatgcttgaagaagaagatgggg 11005357  T
Q  110 atttgcaaatgcctaataagcccaacttttatgcacatgatgtacaagatgaggatgctagagatgattggactggtagttcatggtattcctctggtac 209  Q
    ||||||||||||||||||||||  || ||||| |||| ||| ||| || |||||||  |||||||| |   ||| | ||||| |||| |||||||| |||    
T  11005358 atttgcaaatgcctaataagccttacctttatccacaagatctaccagctgaggattttagagatggtaatactagaagttcttggtcttcctctgatac 11005457  T
Q  210 atca 213  Q
    ||||    
T  11005458 atca 11005461  T

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Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 10901519 - 10901324
Alignment:
Q  18 gatgatagtggctttgtggtgtattcaggcgaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaagaagaagatgaagatttgcaa 117  Q
    |||||| ||||| || ||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||  |||||||||    
T  10901519 gatgattgtggcattatggtgtactcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgcataagaagatggggatttgcaa 10901420  T
Q  118 atgcctaataagcccaacttttatgcacatgatgtacaagatgaggatgctagagatgattggactggtagttcatggtattcctctggtacatca 213  Q
    |||||||| |||||  || ||||| |||| ||| ||| || |||||||  | ||||||||   ||| | ||||| |||| |||||||| |||||||    
T  10901419 atgcctaagaagccttacctttatccacaagatctaccagctgaggatttttgagatgataatactagaagttcgtggttttcctctgatacatca 10901324  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 10979198 - 10979077
Alignment:
Q  10 aagaatatgatgatagtggctttgtggtgtattcaggcgaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaagaagaagatgaag 109  Q
    ||||| |||||||| ||||||||||||||||| ||| | |||||    || ||||||||||||||||||||| | ||||||||||||||||||||||  |    
T  10979198 aagaaaatgatgattgtggctttgtggtgtatacagacaaaacccgacgaccgtccttcaatggataaagtgttggagatgcttgaagaagaagatgggg 10979099  T
Q  110 atttgcaaatgcctaataagcc 131  Q
    | |||||||| |||||||||||    
T  10979098 acttgcaaattcctaataagcc 10979077  T

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Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 11010764 - 11010643
Alignment:
Q  10 aagaatatgatgatagtggctttgtggtgtattcaggcgaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaagaagaagatgaag 109  Q
    ||||| |||||||| ||||| || |||||||| ||| | ||||||  ||||||||||||||||||||||||  | |||||||||||||||||||||| ||    
T  11010764 aagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttggagatgcttgaagaagaagatggag 11010665  T
Q  110 atttgcaaatgcctaataagcc 131  Q
    | ||||| || |||||||||||    
T  11010664 acttgcagattcctaataagcc 11010643  T

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Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 10914463 - 10914342
Alignment:
Q  10 aagaatatgatgatagtggctttgtggtgtattcaggcgaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaagaagaagatgaag 109  Q
    ||||| |||||||| || |||||||||||||| ||  | |||||    ||||||||||||||||| |||||  | |||||||||||||||||||||| ||    
T  10914463 aagaaaatgatgattgtagctttgtggtgtatacaaacaaaaccagaggatcgtccttcaatggaaaaagttttggagatgcttgaagaagaagatggag 10914364  T
Q  110 atttgcaaatgcctaataagcc 131  Q
    | |||||||| |||||||||||    
T  10914363 acttgcaaattcctaataagcc 10914342  T

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Target: chr1; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 11028893 - 11028966
Alignment:
Q  58 gatcgtccttcaatggataaagtgattgagatgcttgaagaagaagatgaagatttgcaaatgcctaataagcc 131  Q
    |||||||||||||||||||||||  | |||||||||||||||||||||| ||| |||||||| |||||||||||    
T  11028893 gatcgtccttcaatggataaagttttggagatgcttgaagaagaagatggagacttgcaaattcctaataagcc 11028966  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 10903303 - 10903182
Alignment:
Q  10 aagaatatgatgatagtggctttgtggtgtattcaggcgaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaagaagaagatgaag 109  Q
    ||||| |||||||  ||||||||||||||||| ||  | |||||    |||||||||||||||||||||||  | |||||||||||| |||||||||  |    
T  10903303 aagaaaatgatgaccgtggctttgtggtgtatacaaacaaaacccgaggatcgtccttcaatggataaagttttggagatgcttgaaaaagaagatgggg 10903204  T
Q  110 atttgcaaatgcctaataagcc 131  Q
    | || ||||| |||||||||||    
T  10903203 acttacaaattcctaataagcc 10903182  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 10932844 - 10932722
Alignment:
Q  10 aagaatatgatgatagtggctttgtggtgtattcaggcgaaacctagtgatcgtccttcaatggataaagtgattg-agatgcttgaagaagaagatgaa 108  Q
    ||||| |||||||| ||||||||||||||||| ||  | || ||    ||||||||||||||||| |||||  | | |||||||||||||||||||||      
T  10932844 aagaaaatgatgatcgtggctttgtggtgtatacaaacaaatcccgaggatcgtccttcaatggaaaaagttttaggagatgcttgaagaagaagatggg 10932745  T
Q  109 gatttgcaaatgcctaataagcc 131  Q
    || |||||||| |||||||||||    
T  10932744 gacttgcaaattcctaataagcc 10932722  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 9234322 - 9234385
Alignment:
Q  34 tggtgtattcaggcgaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag 97  Q
    ||||||||||||  |||||| |||||||||||||||||| | |||||  |||||||||||||||    
T  9234322 tggtgtattcagttgaaaccgagtgatcgtccttcaatgaacaaagtagttgagatgcttgaag 9234385  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 9384072 - 9384009
Alignment:
Q  34 tggtgtattcaggcgaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag 97  Q
    ||||||||||||  |||||| |||||||||||| ||||| | |||||  |||||||||||||||    
T  9384072 tggtgtattcagttgaaaccgagtgatcgtcctacaatgaacaaagtagttgagatgcttgaag 9384009  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 9255310 - 9255351
Alignment:
Q  56 gtgatcgtccttcaatggataaagtgattgagatgcttgaag 97  Q
    |||||||||| |||||| |||||||||| |||||||||||||    
T  9255310 gtgatcgtccctcaatgaataaagtgatagagatgcttgaag 9255351  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 9318572 - 9318613
Alignment:
Q  56 gtgatcgtccttcaatggataaagtgattgagatgcttgaag 97  Q
    ||||||||||||||||| | |||||||| |||||||||||||    
T  9318572 gtgatcgtccttcaatgaacaaagtgatagagatgcttgaag 9318613  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 9319730 - 9319689
Alignment:
Q  56 gtgatcgtccttcaatggataaagtgattgagatgcttgaag 97  Q
    ||||||||||||||||| | |||||||| |||||||||||||    
T  9319730 gtgatcgtccttcaatgaacaaagtgatagagatgcttgaag 9319689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 9350047 - 9350006
Alignment:
Q  56 gtgatcgtccttcaatggataaagtgattgagatgcttgaag 97  Q
    ||||||||||||||||| | |||||||| |||||||||||||    
T  9350047 gtgatcgtccttcaatgaacaaagtgatagagatgcttgaag 9350006  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 11007457 - 11007416
Alignment:
Q  170 gagatgattggactggtagttcatggtattcctctggtacat 211  Q
    |||||||| | ||||||||||||| |||||||||||||||||    
T  11007457 gagatgatagaactggtagttcattgtattcctctggtacat 11007416  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 15927471 - 15927519
Alignment:
Q  49 aaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag 97  Q
    ||||| |||||||||||||||||| | | |||||| |||||||||||||    
T  15927471 aaaccaagtgatcgtccttcaatgaacagagtgatagagatgcttgaag 15927519  T

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