View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14835_low_2 (Length: 448)
Name: NF14835_low_2
Description: NF14835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14835_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 52207357 - 52206926
Alignment:
| Q |
1 |
attttttgatagcacacgaaacttgtacattgtagctccataatctcaaggttgtgaccaagaaattgatggtcaagaaactttcactgtttgaattatg |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52207357 |
attttttgatagcacatgaaacttgtacattgtagctccataatctcaaggttgtgaccaagaaattgatggtcaagaaactttcactgtttgaattatg |
52207258 |
T |
|
| Q |
101 |
ggaacaagcgtgataccaaggtgcagtagcatttgcagttccaagtttcaagctgaggagtgattggtgttatgatgactttcattgattgattatatgg |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
52207257 |
ggaacaagcgtgatgccaaggtgcagtagcatttgcagttccaagtttcaagctgaggagtgattggtgttatgatgactttcattgattgattatatag |
52207158 |
T |
|
| Q |
201 |
caagtagatgatggtatttatcatgaaagaaaagtcagaaacattgaaaaacttgaaacataacatttgaagaacaatttgaatactgaagtcgaaataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52207157 |
caagtagatgatggtatttatcatgaaagaaaagtcagaaacattgaaaaacttgaaacataacatttgaagaacaatttgaatactgaagtcgaaataa |
52207058 |
T |
|
| Q |
301 |
agatctatttctttgcattgacaatagaaaaaagttctcattcttaacatgtctatgcattttatattcctgatataaaacctgtcccaatgttaccaaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
52207057 |
agatctatttctttgcattgacaatagaaaaaagttctcattcttaacatgtctatgcattttatattcctgatataaaacctgtcccaatattaccaaa |
52206958 |
T |
|
| Q |
401 |
caattttgtgaagaatgttgcacgccaataat |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
52206957 |
caattttgtgaagaatgttgcacgccaataat |
52206926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 2 - 170
Target Start/End: Original strand, 27607065 - 27607242
Alignment:
| Q |
2 |
ttttttgatagcacacgaaacttgtacattgtagctccataatctcaaggttgtgaccaagaaattgatggtcaagaa-----actttcactgtttgaat |
96 |
Q |
| |
|
||||||||||||||| |||||| | |||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
27607065 |
ttttttgatagcacatgaaactgg-acattgtagctccataatctcaaggtcgtgaccaagaaattgatggccaagaaactttactttcacagtttgaat |
27607163 |
T |
|
| Q |
97 |
tatgggaacaagcgt--gataccaaggtgcagtag---catttgcagttccaagtttcaagctgaggagtgattggtgt |
170 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| |||||| ||||||||||||| |||| || |||||||||||| |
|
|
| T |
27607164 |
tatgggaacaagcgtgagatgccaaggtgcagtagtaccatttgaagttccaagtttcgagctaagtagtgattggtgt |
27607242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 171 - 337
Target Start/End: Original strand, 27607323 - 27607487
Alignment:
| Q |
171 |
tatgatgactttcattgattgattatatggcaagtagatg-atggtatttatcatgaaagaaaagtcagaaacattgaaaaacttgaaacataacatttg |
269 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| | | || |
|
|
| T |
27607323 |
tatgatgactttcattgattgataatagg--aagtagatggatggtatttatcatgaaagaaaaatcagaaa-attgaaaaacttgaaacacagcgttgc |
27607419 |
T |
|
| Q |
270 |
aagaacaatttgaatactgaagtcgaaataaagatctatttctttgcattgacaatagaaaaaagttc |
337 |
Q |
| |
|
|| ||||| |||||||||||| ||| ||||||||| ||||||||||||||| || ||||||| ||||| |
|
|
| T |
27607420 |
aaaaacaaattgaatactgaaatcgtaataaagatttatttctttgcattgccagtagaaaagagttc |
27607487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 342 - 429
Target Start/End: Original strand, 27607525 - 27607612
Alignment:
| Q |
342 |
tcttaacatgtctatgcattttatattcctgatataaaacctgtcccaatgttaccaaacaattttgtgaagaatgttgcacgccaat |
429 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||||||| || |||||| |||||||||| ||||||||| |||||||| |||||| |
|
|
| T |
27607525 |
tcttaacatgtctatgcattttactttccttagataaaacatgccccaatattaccaaacagatttgtgaagcatgttgcatgccaat |
27607612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University