View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14835_low_3 (Length: 426)
Name: NF14835_low_3
Description: NF14835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14835_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Complemental strand, 44799147 - 44798734
Alignment:
| Q |
13 |
agcagagaaaccaacatgcataaactctttaaatctctcagaaagatcaatgaatgaagcaataattggtgttggaggtctagttgaagagtaactaacc |
112 |
Q |
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| T |
44799147 |
agcagagaaaccaacatgcataaactctttaaatctctcagaaagatcaatgaatgaagcaataattggtgttggaggtctagttgaagagtaactaacc |
44799048 |
T |
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| Q |
113 |
caaacacgaaccattttcatatcatctctatactcaatccatgcattgatgattttcccacttttcaaatcaatccgacgtgaaagaagatcagcagaag |
212 |
Q |
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| T |
44799047 |
caaacacgaaccattttcatatcatctctatactcaatccatgcattgatgattttcccacttttcaaatcaatccgacgtgaaagaagatcagcagaag |
44798948 |
T |
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| Q |
213 |
caaaagaaacaacactgccaagatcaataccaacgtggtttccattaatgtcaccaagagaaggatcaaaacttgtatcaaattcaaccgcaaagtaaga |
312 |
Q |
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| T |
44798947 |
caaaagaaacaacactgccaagatcaataccaacgtggtttccattaatgtcaccaagagaaggatcaaaactcgtatcaaattcaaccgcaaagtaaga |
44798848 |
T |
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| Q |
313 |
atcttgatcagaatgaggaaggcccatgtaaccattagagagagacgagaaatcagtggttgatgaaatgagaaaagcaatgccatcggaagaagaagga |
412 |
Q |
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| T |
44798847 |
atcttgatcagaatgaggaaggcccatgtaaccattagagagagacgagaaatcagtggttgatgaaatgagaaaagcaatgccatcggaagaagaagga |
44798748 |
T |
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| Q |
413 |
caagaaggtgaaga |
426 |
Q |
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| T |
44798747 |
caagaaggtgaaga |
44798734 |
T |
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