View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14835_low_4 (Length: 414)

Name: NF14835_low_4
Description: NF14835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14835_low_4
NF14835_low_4
[»] chr8 (2 HSPs)
chr8 (19-398)||(44687221-44687601)
chr8 (128-189)||(44692021-44692082)
[»] chr2 (3 HSPs)
chr2 (274-375)||(7424013-7424112)
chr2 (19-56)||(41602522-41602559)
chr2 (19-56)||(25306877-25306914)
[»] chr4 (1 HSPs)
chr4 (19-56)||(8005976-8006013)
[»] chr3 (2 HSPs)
chr3 (19-56)||(35244237-35244274)
chr3 (19-56)||(27972664-27972701)
[»] chr7 (1 HSPs)
chr7 (22-54)||(30511232-30511264)
[»] chr1 (1 HSPs)
chr1 (19-56)||(33773273-33773310)


Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 398
Target Start/End: Original strand, 44687221 - 44687601
Alignment:
Q  19 atgggaccttgatactcggcatcctctgattcataatagcattaatcattatcataaccaatgaaattaggtttgagcaagcaatcctaaactatgcgag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44687221 atgggaccttgatactcggcatcctctgattcataatagcattaatcattatcataaccaatgaaattaggtttgagcaagcaatcctaaactatgcgag 44687320  T
Q  119 agcctaatattatacttttggagcggggaggagattgagtttaaataataatgaaggagaataacaacataagaaattacgatatatgatgtagattgct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44687321 agcctaatattatacttttggagcggggaggagattgagtttaaataataatgaaggagaataacaacataagaaattacgatatatgatgtagattgct 44687420  T
Q  219 -nnnnnnncaagtttaaagccctaatggaaataagaagannnnnnnnnnnnagggaggaaataagaagattttgaaagtcacttttgaaacaaactgcaa 317  Q
            |||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44687421 aaaaaaaacaagtttaaagccctaatggaaataagaagatttttattttttagggaggaaataagaagattttgaaagtcaattttgaaacaaactgcaa 44687520  T
Q  318 gggaaggaagaagagtcagaaagaaaataaaaatgaagcttttgtagatggatgaatgttatggcaaccatgatgtgctct 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44687521 gggaaggaagaagagtcagaaagaaaataaaaatgaagcttttgtagatggatgaatgttatggcaaccatgatgtgctct 44687601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 44692021 - 44692082
Alignment:
Q  128 ttatacttttggagcggggaggagattgagtttaaataataatgaaggagaataacaacata 189  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||    
T  44692021 ttatacttttggagcggggagaagattgagcttaaataataaggaaggagagtaacaacata 44692082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 375
Target Start/End: Complemental strand, 7424112 - 7424013
Alignment:
Q  274 ggaaataagaagattttgaaagtcacttttgaaacaaactgcaagggaaggaagaagagtcagaaagaaaataaaaatgaagcttttgtagatggatgaa 373  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||| |||| |||| | | |||||||| ||| ||||||||||||| ||||||||||||||    
T  7424112 ggaaataagaa-attttgaaagtcacctttgaaacaaaccacaaaggaaagaaggaaattcagaaaggaaa-aaaaatgaagcttctgtagatggatgaa 7424015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 41602522 - 41602559
Alignment:
Q  19 atgggaccttgatactcggcatcctctgattcataata 56  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41602522 atgggaccttgatactcggcatcctctgattcataata 41602559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 25306877 - 25306914
Alignment:
Q  19 atgggaccttgatactcggcatcctctgattcataata 56  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  25306877 atgggaccttgatactcggcatcctctaattcataata 25306914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 8005976 - 8006013
Alignment:
Q  19 atgggaccttgatactcggcatcctctgattcataata 56  Q
    |||||||||||| |||||||||||||||||||||||||    
T  8005976 atgggaccttgacactcggcatcctctgattcataata 8006013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 35244237 - 35244274
Alignment:
Q  19 atgggaccttgatactcggcatcctctgattcataata 56  Q
    |||||||||||||||||| |||||||||||||||||||    
T  35244237 atgggaccttgatactcgacatcctctgattcataata 35244274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 27972664 - 27972701
Alignment:
Q  19 atgggaccttgatactcggcatcctctgattcataata 56  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  27972664 atgggaccttgatattcggtatcctctgattcataata 27972701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 30511232 - 30511264
Alignment:
Q  22 ggaccttgatactcggcatcctctgattcataa 54  Q
    |||||||||||||||||||||||||||||||||    
T  30511232 ggaccttgatactcggcatcctctgattcataa 30511264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 33773273 - 33773310
Alignment:
Q  19 atgggaccttgatactcggcatcctctgattcataata 56  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  33773273 atgggaccttgatactcgacatcctctaattcataata 33773310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University