View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14835_low_7 (Length: 351)
Name: NF14835_low_7
Description: NF14835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14835_low_7 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 351
Target Start/End: Complemental strand, 33224146 - 33223807
Alignment:
| Q |
14 |
aagaatatatggagaaataggtatgatgcggacatcttatggtgctgaacatgatggaccat--gagacttggtctgtgtcatactccgcaggtttatca |
111 |
Q |
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| T |
33224146 |
aagaatatatggagaaataggtatgatgcggacatcttatggtgctgaacatgatggaccatatgagacttggtctgtgtcatactccgcaggtttatca |
33224047 |
T |
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| Q |
112 |
gaagttcatttctcattaatgatattatatgacgacgttaatggtgacatcaatctcttaaagttccatttccatgcaccaaagtttattacatttgtta |
211 |
Q |
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| T |
33224046 |
gaagttcatttctcattaatgatattatatgacgacgttaatggtgacatcaatctcttaaagttccatttccatgcaccaaagtttatgacatttgtta |
33223947 |
T |
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| Q |
212 |
tagacagagctaaaaacaaaaatcttctccttacaattgatcttcttaatcaaattgaaatcaaggactctggaagatcttacggaacaaggtttgtcaa |
311 |
Q |
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| T |
33223946 |
tagacagagctaaaaacaaaaatcttctccttacaattgatcttcttaatcaaattgaaatcaaggactctggaagatcttacggaacaaggtttgtcaa |
33223847 |
T |
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| Q |
312 |
tgagactaagaatcattggggaggggttacaaaaacgaac |
351 |
Q |
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| T |
33223846 |
tgagactaagaatcattggggaggggttacaaaaacgaac |
33223807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 252 - 350
Target Start/End: Complemental strand, 33226872 - 33226774
Alignment:
| Q |
252 |
tcttcttaatcaaattgaaatcaaggactctggaagatcttacggaacaaggtttgtcaatgagactaagaatcattggggaggggttacaaaaacgaa |
350 |
Q |
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| T |
33226872 |
tcttcttgatccaattgaaattaaggactctggaaaatcttacggaacaaggtttgttaatgagactaagaatcattggggaggggttacaaaaacgaa |
33226774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 33227043 - 33226902
Alignment:
| Q |
75 |
tgagacttggtctgtgtcatactccgcaggtttatcagaagttcatttctcattaatgatattatatgacgacgttaatggtgacatcaatctcttaaag |
174 |
Q |
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| T |
33227043 |
tgagacttggtcggtgtcatactccgcacgttggtcagaagtttgattctcattaacgatattatatgacaa---aaatggttacatcaatctattaaag |
33226947 |
T |
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| Q |
175 |
ttccatttccatgcaccaaagtttattacatttgttatagacaga |
219 |
Q |
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| T |
33226946 |
ttcagttttggagtacctatgtttattacatttgttatacacaga |
33226902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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