View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14835_low_8 (Length: 349)
Name: NF14835_low_8
Description: NF14835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14835_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 12366141 - 12366467
Alignment:
| Q |
19 |
atttttgtacttaatgtatctccttggctataaaaggagaagagttgtaacatattt------------atgaaattagtccaagtgtgttttatgaaaa |
106 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||||| |
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| T |
12366141 |
atttttgtccttaatgtatctccttggctataaaaggagaagagttgtaacatatttcacacaacttgaatgaaataaatcctagtgtgttttatgaaaa |
12366240 |
T |
|
| Q |
107 |
acgtgttcttctaaatttctctcttctatctgagagctctaagttattatgttcatatcataaggccctctatagagatgcaagtatgctctacacgcgc |
206 |
Q |
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|| ||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
12366241 |
acatgttcttctaactttctctcttctttctgaaagctctaagttattatgttcatatcataagtccctctatagagatgcaagtatgctctacactcgc |
12366340 |
T |
|
| Q |
207 |
ctcagaaatgaggatcttgtgtatataaaaaacatctgactagtgatccatgctacggtcctctctattatgagatgctagtcttaattgataatctgtg |
306 |
Q |
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| T |
12366341 |
cttagaaatgagcatcttgtgtat-cagaaaacatctgactagtgatccatgctacggtcctctttattatgagatgccagtcttaattgataatctgtg |
12366439 |
T |
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| Q |
307 |
cttgagactttttcatgcctatagttgg |
334 |
Q |
| |
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| T |
12366440 |
cttgagactttttcatgcctatggttgg |
12366467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 161 - 334
Target Start/End: Original strand, 12346074 - 12346246
Alignment:
| Q |
161 |
atatcataaggccctctatagagatgcaagtatgctctacacgcgcctcagaaatgaggatcttgtgtatataaaaaacatctgactagtgatccatgct |
260 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
12346074 |
atatcataagtccctctatagagatgcaagtatgctctacactcgcctcagaaatgaggatcttgtgtatc-agaaaacatctgactagtgatccatgct |
12346172 |
T |
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| Q |
261 |
acggtcctctctattatgagatgctagtcttaattgataatctgtgcttgagactttttcatgcctatagttgg |
334 |
Q |
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| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12346173 |
atggtcctctctattatgagatgccagtcttaattgataatctgtgcttgagactttttcatgcctatggttgg |
12346246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 117 - 317
Target Start/End: Complemental strand, 12470439 - 12470240
Alignment:
| Q |
117 |
ctaaatttctctcttctatctgagagctctaagttattatgttcatatcataaggccctctatagagatgcaagtatgctctacacgcgcctcagaaatg |
216 |
Q |
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||||||||||||||| | ||||| | ||||| ||||| |||||||||| || | | ||||||||||||||||| ||||||||| ||||||||||| | |
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| T |
12470439 |
ctaaatttctctcttatgtctgaaaactcta-gttatgatgttcatattattaattcaactatagagatgcaagtacgctctacactcgcctcagaaacg |
12470341 |
T |
|
| Q |
217 |
aggatcttgtgtatataa-aaaacatctgactagtgatccatgctacggtcctctctattatgagatgctagtcttaattgataatctgtgcttgagact |
315 |
Q |
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|||| ||| ||| ||| | |||||||||||||| ||||||||| ||| ||||||||||||||| ||| |||||||||||| || | |||| |||||||| |
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| T |
12470340 |
agga-cttttgtgtatcagaaaacatctgactattgatccatgttacattcctctctattatgaaatgatagtcttaattgctagtttgtggttgagact |
12470242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 18904820 - 18904878
Alignment:
| Q |
173 |
cctctatagagatgcaagtatgctctacacgcgcctcagaaatgaggatcttgtgtata |
231 |
Q |
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| T |
18904820 |
cctctatatagatgcaagtatgctctacactcgcctcataaatgacgatcttgtgtata |
18904878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 146 - 319
Target Start/End: Complemental strand, 18635912 - 18635740
Alignment:
| Q |
146 |
taagttattatgttcatatcataaggccctctatagagatgcaagtatgctctacacgcgcctcagaaatgaggatcttgtgtatataaaaaacatctga |
245 |
Q |
| |
|
||||||||||| |||||||||||| ||| |||||||||| ||||| |||||||| | |||| ||||||||||||||| |||| | ||||||||||| |
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| T |
18635912 |
taagttattatcttcatatcataattttctccatagagatgctagtattctctacactcacctctgaaatgaggatcttgcgtatc-agaaaacatctga |
18635814 |
T |
|
| Q |
246 |
ctagtgatccatgctacggtcctctctattatgagatgctagtcttaattgataatctgtgcttgagacttttt |
319 |
Q |
| |
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||| |||||| ||||| |||||| ||||||| ||||| | | ||||||||||||||||| |||||||||||| |
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| T |
18635813 |
ctatatatccatactacgatcctctatattatgggatgccaattttaattgataatctgtgattgagacttttt |
18635740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 232 - 334
Target Start/End: Complemental strand, 19965431 - 19965329
Alignment:
| Q |
232 |
taaaaaacatctgactagtgatccatgctacggtcctctctattatgagatgctagtcttaattgataatctgtgcttgagactttttcatgcctatagt |
331 |
Q |
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|
||||||||||||||||| ||||||||||||||| |||||||||||| |||| |||||||||||| ||| ||||||||||||||||| |||||||| || |
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| T |
19965431 |
taaaaaacatctgactatagatccatgctacggtgctctctattatgggatgtcagtcttaattgacaatttgtgcttgagacttttttatgcctatggt |
19965332 |
T |
|
| Q |
332 |
tgg |
334 |
Q |
| |
|
||| |
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| T |
19965331 |
tgg |
19965329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 19965518 - 19965441
Alignment:
| Q |
90 |
agtgtgttttatgaaaaacgtgttcttctaaatttctctcttctatctgagagctctaagttattatgttcatatcat |
167 |
Q |
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||||||||| | ||||||| |||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||| |
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| T |
19965518 |
agtgtgtttcaagaaaaacatgttcttctaaatttctctcttatttctgaaagctctaagttattatgatcatatcat |
19965441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 283
Target Start/End: Original strand, 36680931 - 36681080
Alignment:
| Q |
135 |
tctgagagctctaagttattatgttcatatcataaggccctctatagagatgcaagt---atgctctacacgcgcctcagaaatgaggatcttgtgtata |
231 |
Q |
| |
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||||| ||||||| |||||||||||||| || | | |||||||||||||||||| |||||||| || ||||||| ||||| ||||||||||||| |
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| T |
36680931 |
tctgaaagctcta-gttattatgttcatgtctttaattcctctatagagatgcaagcttgatgctctatactcgcctcataaatgcggatcttgtgtat- |
36681028 |
T |
|
| Q |
232 |
taaaaaacatctgactagtgatccatgctacggtcctctctattatgagatg |
283 |
Q |
| |
|
| |||| || |||||| ||||||||| || | || ||||| ||| |||||| |
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| T |
36681029 |
cataaaatatttgactattgatccatgttatgttcttctcttttacgagatg |
36681080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 318
Target Start/End: Original strand, 6314490 - 6314661
Alignment:
| Q |
148 |
agttattatgttcatatcataaggccctctatagagatgcaagtatgctctacacgcgcctcagaaatgaggatcttgtgtatataaaaaacatctgact |
247 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| |||||||| || ||| | ||| |||||||| |||||||| ||| |||||||||| ||||| |
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| T |
6314490 |
agttattatgttcatatcattaatttctctatagagatgtaagtatgcgctccactcaccttagaaatgacgatcttgtatat-taaaaaacatatgact |
6314588 |
T |
|
| Q |
248 |
agtgatccatgctacggtcctctctattatgagatg--ctagtcttaattgataatctgtgcttgagactttt |
318 |
Q |
| |
|
| | ||| ||| || |||||||||||||| |||||| |||| |||||| || | |||||||||||||||| |
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| T |
6314589 |
attaatctatgttatggtcctctctattacgagatggtatagttttaatttttagtatgtgcttgagactttt |
6314661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 4695385 - 4695255
Alignment:
| Q |
103 |
aaaaacgtgttcttctaaatttctctcttctatctgagagctctaagttattatgttcatatcataaggccctctatagagatgcaagtatgctctacac |
202 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| | | | |||||| |||||||||| |||| |||| | ||||||||||||| |||| | |||| |||| |
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| T |
4695385 |
aaaaacatgttcttctaaatttctatcttctttttaaaagctct-agttattatggtcatgtcattaattcctctatagagatacaaggacgctcaacac |
4695287 |
T |
|
| Q |
203 |
gcgcctcagaaatgaggatcttgtgtatataaaaa |
237 |
Q |
| |
|
|||||| || || ||||||||||||| ||||| |
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|
| T |
4695286 |
tcgcctc---aacgaagatcttgtgtataaaaaaa |
4695255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 657965 - 658005
Alignment:
| Q |
33 |
tgtatctccttggctataaaaggagaagagttgtaacatat |
73 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
657965 |
tgtatctcattggctataaaaggagaagagttgtaacatat |
658005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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