View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14836_high_15 (Length: 300)
Name: NF14836_high_15
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14836_high_15 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 28917232 - 28916945
Alignment:
| Q |
14 |
tgctcaaaacttgcatttctaattgagacaaatgcggagattgattctgatggggttagatatttgtttcaatcatgccttgtattaccactttctctcc |
113 |
Q |
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| T |
28917232 |
tgctcaaaacttgcatttctaattgagacaaatgctgacattgattctgatggggttagatatttgtttcaatcatgccttgtattaccactttctctcc |
28917133 |
T |
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| Q |
114 |
ctctctctccatatgttttataattatgtgattttcatttgcaggagaagatagatatgagagatccagatacagttgaaagttactttttagaatatta |
213 |
Q |
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| T |
28917132 |
ctctctctccatatgttttataattatgtgattttcatttgcaggagaagatagatatgagagatccagatacagttgaaagttactttttagaatatta |
28917033 |
T |
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| Q |
214 |
tcaagttatc-nnnnnnnggaagggtggaattctcaggatgtttatattgcccgtgacatcattaaaaatggaaacatcaagcttgac |
300 |
Q |
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| T |
28917032 |
tcaagttatcaaaaaaaaggaagggtggaattctcaggatgtttatattgcccgtgacatcattaaaaatggaaacatcaagcgtgac |
28916945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 145 - 284
Target Start/End: Complemental strand, 28926336 - 28926196
Alignment:
| Q |
145 |
ttttcatttgcaggagaagatagatatgagagatccagatacagttgaaagttactttttagaatattatcaagttatcnnnnnnng-gaagggtggaat |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||| |
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| T |
28926336 |
ttttcatttgcaggagaagatagatatgagagatccagatacagttgaaagttactttttagaatattatcaagttatcaaagaaagagaagggctgaat |
28926237 |
T |
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| Q |
244 |
tctcaggatgtttatattgcccgtgacatcattaaaaatgg |
284 |
Q |
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| T |
28926236 |
tctcaggatatttacattgcccgtgacatcgttaaaaatgg |
28926196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 145 - 287
Target Start/End: Complemental strand, 28902686 - 28902543
Alignment:
| Q |
145 |
ttttcatttgcaggagaagatagatatgagagatccagatacagttgaaagttactttttagaatattatcaagttatc-nnnnnnnggaagggtggaat |
243 |
Q |
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| T |
28902686 |
ttttcatttgcaggagaaggtagatatgagagatccagatacaatagaaagttacttttttgaatattatcaagttatcaagaaaaaagaagggctgaat |
28902587 |
T |
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| Q |
244 |
tctcaggatgtttatattgcccgtgacatcattaaaaatggaaa |
287 |
Q |
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| T |
28902586 |
tctcaggatgtttatactgcccgtgacatcattaaaaatggaaa |
28902543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 28926495 - 28926409
Alignment:
| Q |
14 |
tgctcaaaacttgcatttctaattgagacaaatgcggagattgattctgatggggttagatatttgtttcaatcatgccttgtatta |
100 |
Q |
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| T |
28926495 |
tgctcaaaacttgcatttctaattgagacaaatgctgatgttgattctgatggggtgagatgtttttttcaatcatgccttatatta |
28926409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 28936698 - 28936622
Alignment:
| Q |
14 |
tgctcaaaacttgcatttctaattgagacaaatgcggagattgattctgatggggttagatatttgtttcaatcatg |
90 |
Q |
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| T |
28936698 |
tgctcaaaacttgcatttctaattgaggaaaatgctgaggttgattctgatggggtaagatattcctttcaaacatg |
28936622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 28935881 - 28935823
Alignment:
| Q |
145 |
ttttcatttgcaggagaagatagatatgagagatccagatacagttgaaagttactttt |
203 |
Q |
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| T |
28935881 |
ttttcattttcaggaaaagatagatatgaaagatccagatacatttgaaagttactttt |
28935823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 28892741 - 28892663
Alignment:
| Q |
145 |
ttttcatttgcaggagaagatagatatgagagatccagatacagttgaaagttactttttagaatattatcaagttatc |
223 |
Q |
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| T |
28892741 |
ttttcatttgcaggaaaaggtcgatatgaaagatccagatacacaagaaagttacttttttgattattatcaaattatc |
28892663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 28903462 - 28903376
Alignment:
| Q |
14 |
tgctcaaaacttgcatttctaattgagacaaatgcggagattgattctgatggggttagatatttgtttcaatcatgccttgtatta |
100 |
Q |
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| T |
28903462 |
tgctcaaaacttgcctttctaattgagaaaaatgctgacgtagattctgatggggtaagattttttttttaatcacgccttatatta |
28903376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 34009631 - 34009591
Alignment:
| Q |
247 |
caggatgtttatattgcccgtgacatcattaaaaatggaaa |
287 |
Q |
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| T |
34009631 |
caggatgtttatattgcccgtgacatcattaacaattgaaa |
34009591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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