View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14836_high_16 (Length: 298)

Name: NF14836_high_16
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14836_high_16
NF14836_high_16
[»] chr6 (2 HSPs)
chr6 (15-256)||(2576579-2576820)
chr6 (200-228)||(33065923-33065951)
[»] chr5 (2 HSPs)
chr5 (177-226)||(37508447-37508496)
chr5 (177-226)||(1658153-1658202)
[»] chr8 (2 HSPs)
chr8 (177-220)||(40985130-40985173)
chr8 (177-226)||(36102946-36102995)
[»] chr7 (2 HSPs)
chr7 (177-226)||(41002307-41002356)
chr7 (177-226)||(43188846-43188895)
[»] chr4 (3 HSPs)
chr4 (177-226)||(24279890-24279939)
chr4 (177-226)||(31529995-31530044)
chr4 (177-226)||(38317285-38317334)
[»] chr3 (1 HSPs)
chr3 (177-226)||(55439560-55439609)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 2576579 - 2576820
Alignment:
Q  15 aacaaaatccctttcactttcatttaactattttatttgctttcatcaacaccagtccttatccaatgttcattttggagtagttagttatttgtgtcaa 114  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2576579 aacaaaatccctttcacttgcatttgactattttatttgctttcatcaacaccagtccttatccaatgttcattttggagtagttagttatttgtgtcaa 2576678  T
Q  115 a-gatacnnnnnnnnctctttctcttttaacttgtatgagttgtgatgaagttgttatatttattgagttcctccaaatgaagagaattttgtattatga 213  Q
    | |||||         ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||    
T  2576679 aagatactttttttt-tctttctcttttaacttgtatgagtcgtgatgaagttgttatatttattgagttcctccaaacgaaggggattttgtattatga 2576777  T
Q  214 ataaaaaattaacatttaaagttatcttctatcaataattata 256  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  2576778 ataaaaaattaacatttaaagttatctcctatcaataattata 2576820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 33065923 - 33065951
Alignment:
Q  200 attttgtattatgaataaaaaattaacat 228  Q
    |||||||||||||||||||||||||||||    
T  33065923 attttgtattatgaataaaaaattaacat 33065951  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 37508447 - 37508496
Alignment:
Q  177 ttgagttcctccaaatgaagagaattttgtattatgaataaaaaattaac 226  Q
    |||||||||||||||||| | ||||||| |||||||||||||||||||||    
T  37508447 ttgagttcctccaaatgaggggaattttttattatgaataaaaaattaac 37508496  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 1658202 - 1658153
Alignment:
Q  177 ttgagttcctccaaatgaagagaattttgtattatgaataaaaaattaac 226  Q
    |||| |||| |||||||||||| ||||| |||||||| ||||||||||||    
T  1658202 ttgaattcccccaaatgaagaggattttttattatgactaaaaaattaac 1658153  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 40985130 - 40985173
Alignment:
Q  177 ttgagttcctccaaatgaagagaattttgtattatgaataaaaa 220  Q
    ||||||||| |||||||| ||| |||||||||||||||||||||    
T  40985130 ttgagttcccccaaatgaggaggattttgtattatgaataaaaa 40985173  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 36102946 - 36102995
Alignment:
Q  177 ttgagttcctccaaatgaagagaattttgtattatgaataaaaaattaac 226  Q
    |||||||||||||||||| | | ||||| |||||||| ||||||||||||    
T  36102946 ttgagttcctccaaatgagggggattttttattatgagtaaaaaattaac 36102995  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 41002307 - 41002356
Alignment:
Q  177 ttgagttcctccaaatgaagagaattttgtattatgaataaaaaattaac 226  Q
    ||||||||| |||||||| | ||||||| |||||||| ||||||||||||    
T  41002307 ttgagttcccccaaatgaggggaattttttattatgagtaaaaaattaac 41002356  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 43188895 - 43188846
Alignment:
Q  177 ttgagttcctccaaatgaagagaattttgtattatgaataaaaaattaac 226  Q
    ||||||||| |||||||| | ||||||| |||||||| ||||||||||||    
T  43188895 ttgagttcccccaaatgaggtgaattttttattatgagtaaaaaattaac 43188846  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 24279939 - 24279890
Alignment:
Q  177 ttgagttcctccaaatgaagagaattttgtattatgaataaaaaattaac 226  Q
    ||||||| | |||||||||| ||||||| |||||||| ||||||||||||    
T  24279939 ttgagtttcgccaaatgaagggaattttttattatgagtaaaaaattaac 24279890  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 31530044 - 31529995
Alignment:
Q  177 ttgagttcctccaaatgaagagaattttgtattatgaataaaaaattaac 226  Q
    ||||||||| |||||||| ||| ||||| |||||||| ||||||||||||    
T  31530044 ttgagttcccccaaatgaggaggattttttattatgagtaaaaaattaac 31529995  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 38317285 - 38317334
Alignment:
Q  177 ttgagttcctccaaatgaagagaattttgtattatgaataaaaaattaac 226  Q
    ||||||||| |||||||| ||| ||||| |||||||| ||||||||||||    
T  38317285 ttgagttcccccaaatgaggaggattttttattatgagtaaaaaattaac 38317334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 55439609 - 55439560
Alignment:
Q  177 ttgagttcctccaaatgaagagaattttgtattatgaataaaaaattaac 226  Q
    |||||||||||||||||| | | ||||| |||||||| ||||||||||||    
T  55439609 ttgagttcctccaaatgagggggattttttattatgagtaaaaaattaac 55439560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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