View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14836_high_19 (Length: 260)
Name: NF14836_high_19
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14836_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 34715210 - 34714963
Alignment:
| Q |
1 |
ccctcaaggaacaaagagaaaacaccaactatatataggtaaagccac----acagtcccacggcaacatcaaaatacataattttcttttattacatac |
96 |
Q |
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| T |
34715210 |
ccctcaaggaacaaagagaaaacaccaactatatataggtaaagccacgtacacagtcccacggcaacatcaaaatacatatttttcttttattacatac |
34715111 |
T |
|
| Q |
97 |
ttatatatattttcttggtcaatgtttgtctaacttatacatcctacggttttgtaaatgatacattaatcggttcaacaagagggtctctaaatctcag |
196 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34715110 |
ttatatatattttcttggtcaatgtttgtctagcttatacatcctacggttttgcaaaggatacattaatcggttcaacaagagggtctctaaatctcag |
34715011 |
T |
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| Q |
197 |
gtaacactcttcccttaccagttaggttttttgttgtgagggtatttg |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34715010 |
gtaacactcttcccttaccagttaggttttttgttgtgagggtatttg |
34714963 |
T |
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