View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14836_high_20 (Length: 260)

Name: NF14836_high_20
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14836_high_20
NF14836_high_20
[»] chr4 (14 HSPs)
chr4 (42-197)||(48898963-48899118)
chr4 (107-256)||(45365844-45365993)
chr4 (118-224)||(7773481-7773587)
chr4 (121-211)||(48156098-48156188)
chr4 (174-260)||(48886601-48886687)
chr4 (120-225)||(7790381-7790486)
chr4 (174-258)||(48870915-48870999)
chr4 (174-258)||(48876219-48876303)
chr4 (120-256)||(7771696-7771832)
chr4 (164-211)||(7878728-7878775)
chr4 (123-197)||(7237426-7237500)
chr4 (171-225)||(48853033-48853087)
chr4 (42-78)||(37826798-37826834)
chr4 (42-82)||(45371866-45371906)
[»] chr8 (3 HSPs)
chr8 (42-242)||(15349106-15349306)
chr8 (46-154)||(12195551-12195659)
chr8 (46-154)||(12439979-12440087)
[»] chr5 (3 HSPs)
chr5 (114-211)||(9120058-9120155)
chr5 (125-211)||(179364-179450)
chr5 (169-228)||(29688479-29688538)
[»] chr2 (2 HSPs)
chr2 (2-44)||(17650533-17650575)
chr2 (2-44)||(17722263-17722305)
[»] chr3 (1 HSPs)
chr3 (41-157)||(11024220-11024336)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 42 - 197
Target Start/End: Original strand, 48898963 - 48899118
Alignment:
Q  42 ttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctttggagattt 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48898963 ttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctttggagattt 48899062  T
Q  142 tttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatga 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48899063 tttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatga 48899118  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 107 - 256
Target Start/End: Complemental strand, 45365993 - 45365844
Alignment:
Q  107 cctcaggattgtggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgatcaaataca 206  Q
    ||||| ||||||||||||||||| |||||||| ||||||||| | ||||||    |||||| |||||||||||||||||||||||||||||   |||| |    
T  45365993 cctcacgattgtggtttgtgggtatttggagaatttttcagtttttgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatata 45365894  T
Q  207 aagtgagctcgtcttggacaaataatcatgttcttaccgttgatggcatt 256  Q
    ||||| | |||||||||||||| | ||| |||||| |  |||||||||||    
T  45365893 aagtgcgttcgtcttggacaaagactcacgttcttcctattgatggcatt 45365844  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 7773587 - 7773481
Alignment:
Q  118 tggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgatcaaatacaaagtgagctcg 217  Q
    |||||||||||| |||||||| | | | ||| ||||||||    || |||||||||||||||||||||||||||||||||   |||||||||||   |||    
T  7773587 tggtttgtgggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcg 7773488  T
Q  218 tcttgga 224  Q
    |||||||    
T  7773487 tcttgga 7773481  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 48156188 - 48156098
Alignment:
Q  121 tttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgatcaaatacaaagtg 211  Q
    ||||||||| |||||||| ||| ||||| |||||||||   |||  |||||||| | |||||||||||||||||||| | |||||||||||    
T  48156188 tttgtgggtatttggagaatttctcagtttatgggctgttgattgggctaatgaaagagttgaaatatgggtgatgaacgaatacaaagtg 48156098  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 48886601 - 48886687
Alignment:
Q  174 atacagttgaaatatgggtgatgatcaaatacaaagtgagctcgtcttggacaaataatcatgttcttaccgttgatggcatttctg 260  Q
    ||||| ||||||| ||||||||||   |||||||||||| ||||||||||||||| | || ||||||| | ||||||| ||||||||    
T  48886601 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttctg 48886687  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 7790381 - 7790486
Alignment:
Q  120 gtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgatcaaatacaaagtgagctcgtc 219  Q
    |||||||||| |||||||| ||| ||||| |||| |||    |||||| |||||||||| ||||||||||||||||||   |||||||||||   |||||    
T  7790381 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtc 7790480  T
Q  220 ttggac 225  Q
    ||||||    
T  7790481 ttggac 7790486  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 48870915 - 48870999
Alignment:
Q  174 atacagttgaaatatgggtgatgatcaaatacaaagtgagctcgtcttggacaaataatcatgttcttaccgttgatggcatttc 258  Q
    ||||| ||||||| ||||||||||   |||||||||||| ||||||||||||||| | || ||||||| | ||||||| ||||||    
T  48870915 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttc 48870999  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 48876219 - 48876303
Alignment:
Q  174 atacagttgaaatatgggtgatgatcaaatacaaagtgagctcgtcttggacaaataatcatgttcttaccgttgatggcatttc 258  Q
    ||||| ||||||| ||||||||||   |||||||||||| ||||||||||||||| | || ||||||| | ||||||| ||||||    
T  48876219 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttc 48876303  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 7771696 - 7771832
Alignment:
Q  120 gtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgatcaaatacaaagtgagctcgtc 219  Q
    |||||||||| |||||||| ||| ||||| |||| |||    |||||| |||||||||| ||| ||||||||||||||   |||||||||||   |||||    
T  7771696 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaagtgcattcgtc 7771795  T
Q  220 ttggacaaataatcatgttcttaccgttgatggcatt 256  Q
     ||||| || | || ||||||| | ||||||| ||||    
T  7771796 atggactaaaactcttgttctttctgttgatgccatt 7771832  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 7878728 - 7878775
Alignment:
Q  164 tatgctaatgatacagttgaaatatgggtgatgatcaaatacaaagtg 211  Q
    |||| |||||||||||||||||||||||||||||   |||||||||||    
T  7878728 tatgataatgatacagttgaaatatgggtgatgaaagaatacaaagtg 7878775  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 7237500 - 7237426
Alignment:
Q  123 tgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatga 197  Q
    ||||||| |||||||| ||| ||||| ||||||||    |||||| |||||||||| ||| ||||||||||||||    
T  7237500 tgtgggtatttggagaatttctcagtctatgggctcaggattatgataatgatacaattgtaatatgggtgatga 7237426  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 48853033 - 48853087
Alignment:
Q  171 atgatacagttgaaatatgggtgatgatcaaatacaaagtgagctcgtcttggac 225  Q
    |||||||||||||||||||||| ||||   ||||||||||| | |||||||||||    
T  48853033 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggac 48853087  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 37826834 - 37826798
Alignment:
Q  42 ttgcctttgatttaacggaaaggaaactgttagagat 78  Q
    |||||||| |||||| |||||||||||||||||||||    
T  37826834 ttgcctttaatttaatggaaaggaaactgttagagat 37826798  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 45371906 - 45371866
Alignment:
Q  42 ttgcctttgatttaacggaaaggaaactgttagagatgtct 82  Q
    ||||||||||||||| |||| ||||||| ||||||||||||    
T  45371906 ttgcctttgatttaatggaacggaaacttttagagatgtct 45371866  T

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Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 15349106 - 15349306
Alignment:
Q  42 ttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctttggagattt 141  Q
    |||| ||||||||||  |||||||||||||| |||||| |||||||||||||||| ||||||  | ||   ||||||||||||||||||||||| || ||    
T  15349106 ttgcatttgatttaaacgaaaggaaactgtttgagatgcctcctccagatgattttgaacatgatgctggtgattgtggtttgtgggtctttggcgaatt 15349205  T
Q  142 tttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgatcaaatacaaagtgagctcgtcttggacaaataatcatgttctt 241  Q
    ||| ||| | ||| || |  ||||| |||||||||   ||||||||||||||||||   |||||||||||| ||| ||||||||||| | || |||||||    
T  15349206 ttttagtctttggtctacggattatcctaatgatagctttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 15349305  T
Q  242 a 242  Q
    |    
T  15349306 a 15349306  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 12195551 - 12195659
Alignment:
Q  46 ctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctttggagattttttc 145  Q
    ||||||||||| |||||||||| ||||||||||  ||| |||||||||||  || |||  |||  || ||| |||||||||||| |||||| | ||| ||    
T  12195551 ctttgatttaatggaaaggaaattgttagagatacctcttccagatgattacgaccatggtccagagcattatggtttgtgggtatttggaaaatttctc 12195650  T
Q  146 agtatatgg 154  Q
    ||| |||||    
T  12195651 agtctatgg 12195659  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 12439979 - 12440087
Alignment:
Q  46 ctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctttggagattttttc 145  Q
    ||||||||||| |||||||||| ||||||||||  ||| |||||||||||  || |||  |||  || ||| |||||||||||| |||||| | ||| ||    
T  12439979 ctttgatttaatggaaaggaaattgttagagatacctcttccagatgattacgaccatggtccagagcattatggtttgtgggtatttggaaaatttctc 12440078  T
Q  146 agtatatgg 154  Q
    ||| |||||    
T  12440079 agtctatgg 12440087  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 9120058 - 9120155
Alignment:
Q  114 attgtggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgatcaaatacaaagtg 211  Q
    |||||| | ||||||| |||||||| ||| ||||||||||||||    ||| ||||||||||||||||||||||||||||||||   |||||||||||    
T  9120058 attgtgatgtgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtg 9120155  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 179364 - 179450
Alignment:
Q  125 tgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgatcaaatacaaagtg 211  Q
    ||||| |||||| | ||| ||||||||||||||    |||||| |||||||||||||||||||||||||||||   |||||||||||    
T  179364 tgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatacaaagtg 179450  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 29688479 - 29688538
Alignment:
Q  169 taatgatacagttgaaatatgggtgatgatcaaatacaaagtgagctcgtcttggacaaa 228  Q
    ||||| |||||||||||||||||||||||  |||||||| |||   ||||||||||||||    
T  29688479 taatggtacagttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaa 29688538  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 17650533 - 17650575
Alignment:
Q  2 atcagttttcctcaattctcatcacatgaaacatccatcattg 44  Q
    ||||||||||||||||||||||  |||||||||| ||||||||    
T  17650533 atcagttttcctcaattctcatatcatgaaacattcatcattg 17650575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 17722263 - 17722305
Alignment:
Q  2 atcagttttcctcaattctcatcacatgaaacatccatcattg 44  Q
    |||| |||||||||||||||||  |||||||||||||||||||    
T  17722263 atcaattttcctcaattctcatatcatgaaacatccatcattg 17722305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 11024336 - 11024220
Alignment:
Q  41 attgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctttggagatt 140  Q
    |||||||||||||||  ||||||| |||| || |||||| ||  |||||||| ||| || |||   |||  |||||||| ||||||| | |||||||| |    
T  11024336 attgcctttgatttagtggaaagggaacttttggagatgccttttccagatggttttgatcatgaacctatggattgtgatttgtggatatttggagaat 11024237  T
Q  141 ttttcagtatatgggct 157  Q
    || ||||| ||||||||    
T  11024236 ttctcagtctatgggct 11024220  T

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