View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14836_high_26 (Length: 237)
Name: NF14836_high_26
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14836_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 26160642 - 26160857
Alignment:
| Q |
1 |
atcaatactttcttagtaaaggaaaacgttgaaacaaaccagagaattaggtcacatgagtttcaaatgtggaatcatgtgtagcttaattagtagaatg |
100 |
Q |
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| T |
26160642 |
atcaatactttcttagaaaaggaaaacattgaaacaaaccagagaattaggtcacttgagtttcaaatgtggaatcatgtgtagcttaattagtagaaag |
26160741 |
T |
|
| Q |
101 |
atattcaatcaaagaacatgatttttatagctgtgaattaatcgatgatcgggcaagaataaactgatacagcgattcaagctagttatgcaatggtggt |
200 |
Q |
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| T |
26160742 |
atattcaataaaagaacatgatgtttatagctgtgaattaatcgatgatcgggcaagaataaactgatacagtgattcaagctagttatgcaatggtggt |
26160841 |
T |
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| Q |
201 |
gtttatgttcaacgtg |
216 |
Q |
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|||||||||||||||| |
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| T |
26160842 |
gtttatgttcaacgtg |
26160857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 53574857 - 53574821
Alignment:
| Q |
69 |
gtggaatcatgtgtagcttaattagtagaatgatatt |
105 |
Q |
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| T |
53574857 |
gtggaatcatgtgtagcttaattagtataaagatatt |
53574821 |
T |
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