View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14836_high_27 (Length: 229)
Name: NF14836_high_27
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14836_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 33030192 - 33029987
Alignment:
| Q |
1 |
ttccatctctttttctaagacaatgaacatcaattttcaagtttttcatctttgagttactcttcaagcttgcatccatgacagtgaatgttgaatttca |
100 |
Q |
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| T |
33030192 |
ttccatctctttttctaagacaatgaacatcaattttcaaatttctcatctttgagttactcttcaagcttgcatccatgacagtgaatgttgaatttca |
33030093 |
T |
|
| Q |
101 |
acaaacttgctctaaagttatgagttttattatttatttattgtcattcagattgtgatttttaagttactcttcaagctttcattcatcgacaattttt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33030092 |
acaa-cttgctctaaagttatgagttttattatttatttattgtcattcagattgtgatttttaagttactcttcaagctttcattcatcgacaattttt |
33029994 |
T |
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| Q |
201 |
ctctctc |
207 |
Q |
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||||||| |
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| T |
33029993 |
ctctctc |
33029987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 33040790 - 33040671
Alignment:
| Q |
1 |
ttccatctctttttctaagacaatgaacatcaattttcaagtttttcatctttgagttactcttcaagcttgcatccatgacagtgaatgttgaatttca |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
33040790 |
ttccatctctttttctaagacaatgaatatcaattttcaaatttttca--ttttagttactcttcaagcttgcattcatgactactaatgttgaatttca |
33040693 |
T |
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| Q |
101 |
acaaacttgctctaaagttatg |
122 |
Q |
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| T |
33040692 |
acttacttgctctaaatttatg |
33040671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 157
Target Start/End: Complemental strand, 33025699 - 33025554
Alignment:
| Q |
9 |
ctttttctaagacaatgaacatcaattttcaagtttttcatctttgagttactcttcaagcttgcatccatgacagtgaatgttgaatttcaacaaactt |
108 |
Q |
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||||||| |||||| |||| |||||||||||| |||||||||||| ||||||||||||| ||||| | |||||| ||||||| |||||||||| |||| |
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| T |
33025699 |
ctttttcaaagacagtgaatatcaattttcaaatttttcatctttaagttactcttcaaccttgccttcatgactatgaatgtcgaatttcaacttactt |
33025600 |
T |
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| Q |
109 |
gctctaaagttatgagttttattatttatttattgtcattcagattgtg |
157 |
Q |
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|||||| | ||||| || |||||||||||||||||||| ||||||| |
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| T |
33025599 |
gctctagatttatggatt---ttatttatttattgtcattccgattgtg |
33025554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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