View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14836_high_31 (Length: 223)

Name: NF14836_high_31
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14836_high_31
NF14836_high_31
[»] chr5 (3 HSPs)
chr5 (16-187)||(35056995-35057167)
chr5 (126-191)||(43017355-43017420)
chr5 (20-79)||(43017292-43017351)
[»] chr6 (1 HSPs)
chr6 (37-104)||(14445479-14445547)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 35056995 - 35057167
Alignment:
Q  16 atcgttgaaaacaaaaataagagagagatcaagtaaacttatttgaatagtgttgaagaatttagccatcgaca-tggttccaataacatcttttgaaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||     
T  35056995 atcgttgaaaacaaaaataagagagagatcaagtaaacttatttgaatagtgttgaataatttagccatcgacactggttccaataatatcttttgaaag 35057094  T
Q  115 taagtaatatgaaacattcaaaataataaatcatcacataaacatgagattacataacaaatcaaatttatct 187  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  35057095 taagtaatatgaaacattcaaaataataaatcatcacataaacctgagattacagaacaaatcaaatttatct 35057167  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 43017355 - 43017420
Alignment:
Q  126 aaacattcaaaataataaatcatcacataaacatgagattacataacaaatcaaatttatctcaga 191  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  43017355 aaacattcaaaataataaatcatcacataaacctgagattacataacaagtcgaatttatctcaga 43017420  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 43017292 - 43017351
Alignment:
Q  20 ttgaaaacaaaaataagagagagatcaagtaaacttatttgaatagtgttgaagaattta 79  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43017292 ttgaaaacaagaataagagagtgatcaagtaaacttatttgaatagtgttgaagaattta 43017351  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 14445479 - 14445547
Alignment:
Q  37 agagagatcaagtaaacttatttg-aatagtgttgaagaatttagccatcgacatggttccaataacat 104  Q
    ||||||||||||||||||||| || |||||||||| | ||| ||||||||||||  |||| ||||||||    
T  14445479 agagagatcaagtaaacttatctgtaatagtgttgtataatgtagccatcgacactgttctaataacat 14445547  T

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