View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14836_high_4 (Length: 452)
Name: NF14836_high_4
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14836_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 24921873 - 24921717
Alignment:
| Q |
1 |
tatgttgatcaaatgaggtgaggcctagaaaggttaggagggttttttggttaatttggcacgccgcaatttggatcatttggatagagcggaatgattg |
100 |
Q |
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| T |
24921873 |
tatgttggtcaaatgaggtgaggcctaaaaaggttaggagggctttttggttaatttggcacgccgcaattcggatcatttggacggagaggaatgattg |
24921774 |
T |
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| Q |
101 |
tattttttaataattcgatcaaggaggttgataacttagtggagaagataaaagtcctatt |
161 |
Q |
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| T |
24921773 |
tat-ttttaataattcgatcaaggaggttgatgact---tggtgaagataaaagtcctatt |
24921717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 2576871 - 2576650
Alignment:
| Q |
14 |
tgaggtgaggcctagaaaggttaggagggttttttggttaatttggcacgccgcaatttggatcatttggatagagcggaatgattgtatttttta--at |
111 |
Q |
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| T |
2576871 |
tgagttgaggcctataaagcttaggcgtggttagtggttaatttggtacgcggcaatttaggtgatttggaaagagatgaatgattatatctttaatgat |
2576772 |
T |
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| Q |
112 |
aattcgatcaaggaggttgataacttagtggagaagataaaagtcctattgtggcattggagtcttagtaggttgaaaattgtg-catgtttgtactact |
210 |
Q |
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| T |
2576771 |
aat--ga-caaggaggttgacgaattggtggaaaaaataaa-gtcttcttgtggcattggagtcttactaggttgaaaattgtgtcgcgtttgtattacg |
2576676 |
T |
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| Q |
211 |
agtggtgttggaatcctagggattgt |
236 |
Q |
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| T |
2576675 |
cgtagtattggaatcctatggattgt |
2576650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 53317876 - 53317823
Alignment:
| Q |
54 |
atttggcacgccgcaatttggatcatttggatagagcggaatgattgtattttt |
107 |
Q |
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| T |
53317876 |
atttggcacgccgtaatttgggtgatttggaaagagcggaatgataggattttt |
53317823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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