View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14836_high_5 (Length: 438)
Name: NF14836_high_5
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14836_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 26568644 - 26568215
Alignment:
| Q |
1 |
gaggatctaggaacaaaaataagaaacagacatgagccttgaaagggaccgaaaacaaagaaccttaagtcgcgctatagttgttttcctttctcttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26568644 |
gaggatctaggaacaaaaataagaaacagacatgagccttgaaagggaccgaaaacaaagaaccttaagtcgcgctatagttgttttcctttctcttttg |
26568545 |
T |
|
| Q |
101 |
gcatttgaactaggacttgatcggaagattatttctcagctatgtgaatcgactagaaaggacttcaaggtattgtagaactccttagccttttccacac |
200 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26568544 |
gcatttgaactaggacttgatcagaaaattatttctcagctatgtgaatcgactagaaaggacttcaaggtattgtagaactccttagccttttccacac |
26568445 |
T |
|
| Q |
201 |
aaaatgcatgccctgcattcttgatcaccactatttgagcattgtcccctaaatgcctgtgattcaaatccaatgagttcaag-------atttaacaag |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
26568444 |
aaaatgcatgccctgcattcttgatcaccactatttgagcattgtcccctaaatgcctgtgattcaaatccaatgagttcaagattcaaaatttaaaaag |
26568345 |
T |
|
| Q |
294 |
gactccacaattaacaaaacaagtacagtgagattgttattaaaatattaaccttttcaatctgtggccaagctccaaagggaacacttgatcatgttct |
393 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26568344 |
gactccacaattaacaaaacaagtacaatgagattgttattaaaatattaaccttttcaatctgtggccaagctccaaagggaacacttgatcatgttct |
26568245 |
T |
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| Q |
394 |
ccccagataattaatgtaggctgcatagaa |
423 |
Q |
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| T |
26568244 |
ccccagataattaatgtaggctgcatagaa |
26568215 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 1676679 - 1676623
Alignment:
| Q |
203 |
aatgcatgccctgcattcttgatcaccactatttgagcattgtcccctaaatgcctg |
259 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||| || |||| ||||||| |
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| T |
1676679 |
aatgcatgccctgcattcttgatgaccaccatttgagcattttcacctatatgcctg |
1676623 |
T |
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