View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14836_low_11 (Length: 411)

Name: NF14836_low_11
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14836_low_11
NF14836_low_11
[»] chr4 (6 HSPs)
chr4 (5-388)||(1560137-1560510)
chr4 (232-313)||(1561237-1561319)
chr4 (318-388)||(11384274-11384343)
chr4 (318-388)||(11385618-11385687)
chr4 (231-310)||(42856444-42856524)
chr4 (339-388)||(1561326-1561375)
[»] chr8 (10 HSPs)
chr8 (107-400)||(2376985-2377270)
chr8 (43-399)||(38119795-38120132)
chr8 (231-402)||(2380181-2380343)
chr8 (318-388)||(42127442-42127511)
chr8 (318-388)||(45015391-45015460)
chr8 (318-388)||(6132513-6132582)
chr8 (319-382)||(43711674-43711737)
chr8 (318-388)||(42128787-42128856)
chr8 (318-370)||(6133650-6133701)
chr8 (340-382)||(28322803-28322845)
[»] chr5 (3 HSPs)
chr5 (262-400)||(35237358-35237498)
chr5 (232-399)||(8284799-8284957)
chr5 (313-388)||(35238017-35238092)
[»] chr2 (5 HSPs)
chr2 (318-388)||(28240728-28240797)
chr2 (318-388)||(28239436-28239505)
chr2 (318-388)||(26379449-26379518)
chr2 (318-388)||(26380684-26380753)
chr2 (318-379)||(36681185-36681245)
[»] chr7 (1 HSPs)
chr7 (231-310)||(33329414-33329494)
[»] chr6 (2 HSPs)
chr6 (355-399)||(22971414-22971458)
chr6 (355-399)||(23816940-23816984)
[»] chr1 (2 HSPs)
chr1 (232-304)||(13324512-13324584)
chr1 (274-364)||(13325386-13325476)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 5 - 388
Target Start/End: Complemental strand, 1560510 - 1560137
Alignment:
Q  5 caagttcaagatcttctttgtttccttcattcatgtcgaattcaattgttctttgtaacccagatctcaacttttgaagaacgaagaagaaaaagaacgc 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||   |||  |    
T  1560510 caagatcaagatcttctttgtttccttcattcatgtcgaattcacttgttctttgtaacccatatctcaacttttgaagaacgaagaagaa---gaatcc 1560414  T
Q  105 gattgatttgagttagttttgattttgatgaattagttttgatttgtaccaaaaacgttaatgaattcgttttgatatgttttggaattcgttcttcccg 204  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||  |    
T  1560413 gattgattggagttcgttttgattttgatgaattagttttgatttgtaccaaaaacgttcatgaattcgttttgatttgttttggaattcgttcttcagg 1560314  T
Q  205 atttgcatagtttaatt--ttttcatgggttttgatgatgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgct-ggtttgatga 301  Q
    |||||||||||||||||  ||||| |||||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||||| ||||||||||    
T  1560313 atttgcatagtttaattttttttcctgggttttgatgatgaaggtgatgaatgttactggatttattgatgaagatgatgaatgttgctgggtttgatga 1560214  T
Q  302 tgaacatgatgaggagagatgaatgttaacattttttccacaaaatttaacataatggatttaattgatggacggaggtaatttaaa 388  Q
    |||||||          ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1560213 tgaacat----------gatgaatgttaacgttttttccacaagatttaacataatggatttaattgatggacggaggtaatttaaa 1560137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 313
Target Start/End: Original strand, 1561237 - 1561319
Alignment:
Q  232 ttttgatgatgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgct-ggtttgatgatgaacatgatga 313  Q
    ||||||||||||||||||||||||||||| | ||||||||| |||||||| ||||||||| ||| |||||||||| |||||||    
T  1561237 ttttgatgatgaaggtgatgaatgttgctggatttattgatgaagatgataaatgttgctgggtatgatgatgaatatgatga 1561319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 11384343 - 11384274
Alignment:
Q  318 agatgaatgttaacattttttccacaaaatttaacataatggatttaattgatggacggaggtaatttaaa 388  Q
    ||||||||||||||| |||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||    
T  11384343 agatgaatgttaacagtttttc-acaaaagttaacagaatggatttaaatgatggacggaggtaatttaaa 11384274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 388
Target Start/End: Original strand, 11385618 - 11385687
Alignment:
Q  318 agatgaatgttaacattttttccacaaaatttaacataatggatttaattgatggacggaggtaatttaaa 388  Q
    ||||||||||||||| |||||| |||||| |||||||||||||||||| |||| || ||| |||| |||||    
T  11385618 agatgaatgttaacagtttttc-acaaaagttaacataatggatttaaatgatagagggatgtaacttaaa 11385687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 42856444 - 42856524
Alignment:
Q  231 gttttgatgatgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgct-ggtttgatgatgaacatga 310  Q
    ||||||||||| || ||||||||| ||  | ||||||||||| || ||||||||||||| | ||||||||| |||||||||    
T  42856444 gttttgatgattaatgtgatgaatttttttgggtttattgatgaaaatgatgaatgttgttgggtttgatggtgaacatga 42856524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 388
Target Start/End: Original strand, 1561326 - 1561375
Alignment:
Q  339 ccacaaaatttaacataatggatttaattgatggacggaggtaatttaaa 388  Q
    |||||| |||||||| |||| ||||||| ||||||||||| |||||||||    
T  1561326 ccacaagatttaacagaatgaatttaatcgatggacggagataatttaaa 1561375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 107 - 400
Target Start/End: Complemental strand, 2377270 - 2376985
Alignment:
Q  107 ttgatttgagttagttttgattttgatgaattagttttgatttgtaccaaaaacgttaatgaattcgttttgatatgttttggaattcgttcttcccgat 206  Q
    |||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| || |||||||||| |||||||||  |||    
T  2377270 ttgattggagttcgttttaattttgatgaattaattttgatttgtaccaaaaactttaatgaattcgttttcatttgttttggaaatcgttcttctagat 2377171  T
Q  207 ttgcatagtttaatt-ttttcatgggttttgatgatgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgct-ggtttgatgatga 304  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||| | ||||||||| |||||||||||||||||| |||||||||||||    
T  2377170 ttgcatagtttaatttttttcctggattttgatgatgaaggtgataaatgttgctggatttattgatgaagatgatgaatgttgctgggtttgatgatga 2377071  T
Q  305 acatgatgaggagagatgaatgttaacattttttccacaaaatttaacataatggatttaattgatggacggaggtaatttaaatgatcaaattga 400  Q
    ||||          ||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| || ||||||||    
T  2377070 acat----------gatgaatattaacattttttccacaagatttaacataatggatttaactgatggacgggggtaatttaaaggaccaaattga 2376985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 43 - 399
Target Start/End: Complemental strand, 38120132 - 38119795
Alignment:
Q  43 aattcaattgttctttgtaacccagatctcaacttttgaagaacgaagaagaaaaagaacgcgattgatttgagttagttttgattttgatgaattagtt 142  Q
    |||||| |||||| |||||||||||||||||| ||||||||||||||||||||   |||||||||||||| ||||| ||||||||||||||||||||||     
T  38120132 aattcacttgttcattgtaacccagatctcaatttttgaagaacgaagaagaa---gaacgcgattgattggagttcgttttgattttgatgaattagtc 38120036  T
Q  143 ttgatttgtaccaaaaacgttaatgaattcgttttgatatgttttggaattcgttcttcccgatttgcatagtttaa---ttttttcatgggttttgatg 239  Q
    ||||||||||||||||||||| |||||||          ||||||||||||||||||||  ||||||||||||| ||   ||||||  || |||||||||    
T  38120035 ttgatttgtaccaaaaacgttcatgaatt----------tgttttggaattcgttcttcaggatttgcatagttaaattttttttttttgagttttgatg 38119946  T
Q  240 atgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgct-ggtttgatgatgaacatgatgaggagagatgaatgttaacatttttt 338  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||| | ||||||||||||||||           ||||||||||||| ||||||    
T  38119945 atgaaggtgatgaatgttgctgggtttattgatgaagatgatgaatgttgttgggtttgatgatgaaca----------cgatgaatgttaacgtttttt 38119856  T
Q  339 ccacaaaatttaacataatggatttaattgatggacggaggtaatttaaatgatcaaattg 399  Q
    |||||| ||||| || |||||||| ||||||| ||||||||||||||||| ||| ||||||    
T  38119855 ccacaagatttatcagaatggattcaattgatagacggaggtaatttaaaggattaaattg 38119795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 231 - 402
Target Start/End: Original strand, 2380181 - 2380343
Alignment:
Q  231 gttttgatgatgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgctgg-tttgatgatgaacatgatgaggagagatgaatgtta 329  Q
    |||||||| ||||||||||||||| || || ||| ||||||| |||||||||||||||| ||| |||||||||||||||          |||||||||||    
T  2380181 gttttgataatgaaggtgatgaatttttctaggtatattgatgaagatgatgaatgttgttggatttgatgatgaacat----------gatgaatgtta 2380270  T
Q  330 acattttttccacaaaatttaacataatggatttaattgatggacggaggtaatttaaatgatcaaattgatg 402  Q
    || ||||| |||||| |||||| | ||||||||||| | ||||||| |||||||||||| |||||||||||||    
T  2380271 acgtttttcccacaagatttaatagaatggatttaactaatggacgaaggtaatttaaaggatcaaattgatg 2380343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 42127511 - 42127442
Alignment:
Q  318 agatgaatgttaacattttttccacaaaatttaacataatggatttaattgatggacggaggtaatttaaa 388  Q
    ||||||||||||||| |||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||    
T  42127511 agatgaatgttaacagtttttc-acaaaagttaacagaatggatttaaatgatggacggaggtaatttaaa 42127442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 45015460 - 45015391
Alignment:
Q  318 agatgaatgttaacattttttccacaaaatttaacataatggatttaattgatggacggaggtaatttaaa 388  Q
    ||||||||||||||| |||||| |||||| |||||| ||||||||||| |||||||||||||||| |||||    
T  45015460 agatgaatgttaacagtttttc-acaaaagttaacagaatggatttaaatgatggacggaggtaacttaaa 45015391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 6132582 - 6132513
Alignment:
Q  318 agatgaatgttaacattttttccacaaaatttaacataatggatttaattgatggacggaggtaatttaaa 388  Q
    |||||||||||||||||||||  |||||| |||||||||||||||||| |||||||| ||| ||| |||||    
T  6132582 agatgaatgttaacatttttta-acaaaagttaacataatggatttaaatgatggacagagataaattaaa 6132513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 43711737 - 43711674
Alignment:
Q  319 gatgaatgttaacattttttccacaaaatttaacataatggatttaattgatggacggaggtaa 382  Q
    ||||||||||||| |||||  || |||||||||||||||||||||| ||||  |||||||||||    
T  43711737 gatgaatgttaacgtttttctcaaaaaatttaacataatggatttatttgactgacggaggtaa 43711674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 388
Target Start/End: Original strand, 42128787 - 42128856
Alignment:
Q  318 agatgaatgttaacattttttccacaaaatttaacataatggatttaattgatggacggaggtaatttaaa 388  Q
    ||||||||||||||| |||||| |||||| |||||| ||||||||||| |||| || |||||||| |||||    
T  42128787 agatgaatgttaacagtttttc-acaaaagttaacagaatggatttaaatgatagagggaggtaacttaaa 42128856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 370
Target Start/End: Original strand, 6133650 - 6133701
Alignment:
Q  318 agatgaatgttaacattttttccacaaaatttaacataatggatttaattgat 370  Q
    |||||||||||||||||||||  |||||| |||||||||||||||||| ||||    
T  6133650 agatgaatgttaacatttttta-acaaaagttaacataatggatttaaatgat 6133701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 28322845 - 28322803
Alignment:
Q  340 cacaaaatttaacataatggatttaattgatggacggaggtaa 382  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||    
T  28322845 cacaatatttaacataatggatttatttgattgacggaggtaa 28322803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 262 - 400
Target Start/End: Complemental strand, 35237498 - 35237358
Alignment:
Q  262 ggtttattgataaagatgatgaatgttgctgg-tttgatgatgaacatgatg-aggagagatgaatgttaacattttttccaca-aaatttaacataatg 358  Q
    |||||||| || |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| ||||    ||||||| ||||    
T  35237498 ggtttattaatgaagatgatgaatgttgctggatttgatgatgaacatgatgaaggagagatgaatgttaac-tttttttcacatggttttaacagaatg 35237400  T
Q  359 gatttaattgatggacggaggtaatttaaatgatcaaattga 400  Q
     ||||| |||||||||||| |||||||||| |||||||||||    
T  35237399 aatttagttgatggacggaagtaatttaaaagatcaaattga 35237358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 232 - 399
Target Start/End: Original strand, 8284799 - 8284957
Alignment:
Q  232 ttttgatgatgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgctgg-tttgatgatgaacatgatgaggagagatgaatgttaa 330  Q
    |||| ||||||||||||||||||||||||   ||||||||| ||||||| |||  ||| ||| |||||||||||||||||||| |          |||||    
T  8284799 tttttatgatgaaggtgatgaatgttgctgcatttattgatgaagatgacgaacattgttgggtttgatgatgaacatgatgaag----------gttaa 8284888  T
Q  331 cattttttccacaaaatttaacataatggatttaattgatggacggaggtaatttaaatgatcaaattg 399  Q
      |||||||||||| |||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||    
T  8284889 tgttttttccacaagatttgacagaatggatttaattgatggacggagataatttaaaggatcaaattg 8284957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 313 - 388
Target Start/End: Original strand, 35238017 - 35238092
Alignment:
Q  313 aggagagatgaatgttaacattttttccacaaaatttaacataatggatttaattgatggacggaggtaatttaaa 388  Q
    ||||||||||||||||||  |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  35238017 aggagagatgaatgttaatttttttttcacaagatttaacagaatggatttaattgatggacggaggtaatttaaa 35238092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 388
Target Start/End: Original strand, 28240728 - 28240797
Alignment:
Q  318 agatgaatgttaacattttttccacaaaatttaacataatggatttaattgatggacggaggtaatttaaa 388  Q
    ||||||||||||||| |||||| |||||| |||||| ||||||||||| |||||||||||||||| |||||    
T  28240728 agatgaatgttaacagtttttc-acaaaagttaacagaatggatttaaatgatggacggaggtaacttaaa 28240797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 28239505 - 28239436
Alignment:
Q  318 agatgaatgttaacattttttccacaaaatttaacataatggatttaattgatggacggaggtaatttaaa 388  Q
    ||||||||||||||| |||||| |||||| |||| | ||||||||||| ||||||||| ||||||||||||    
T  28239505 agatgaatgttaacagtttttc-acaaaagttaatagaatggatttaaatgatggacgtaggtaatttaaa 28239436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 26379518 - 26379449
Alignment:
Q  318 agatgaatgttaacattttttccacaaaatttaacataatggatttaattgatggacggaggtaatttaaa 388  Q
    |||||||||||||||||||||  |||||| |||||||||| ||||||| |||||| ||||| ||| |||||    
T  26379518 agatgaatgttaacatttttt-aacaaaagttaacataatagatttaaatgatgggcggagataaattaaa 26379449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 388
Target Start/End: Original strand, 26380684 - 26380753
Alignment:
Q  318 agatgaatgttaacattttttccacaaaatttaacataatggatttaattgatggacggaggtaatttaaa 388  Q
    ||||||||||||| |||||||  |||||| ||||||||||| |||||  |||| ||||||||||| |||||    
T  26380684 agatgaatgttaatatttttta-acaaaaattaacataatgaatttagatgatagacggaggtaaattaaa 26380753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 36681245 - 36681185
Alignment:
Q  318 agatgaatgttaacattttttccacaaaatttaacataatggatttaattgatggacggagg 379  Q
    ||||||||||||||||||||   |||||| ||||||||||||||||| ||||  ||||||||    
T  36681245 agatgaatgttaacatttttga-acaaaagttaacataatggatttatttgactgacggagg 36681185  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 33329414 - 33329494
Alignment:
Q  231 gttttgatgatgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgct-ggtttgatgatgaacatga 310  Q
    |||||||||||||| ||||||||| ||  | | ||||||||| || ||||||||||||||| ||||||||  |||||||||    
T  33329414 gttttgatgatgaatgtgatgaatttttttggatttattgatgaaaatgatgaatgttgctgggtttgatagtgaacatga 33329494  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 399
Target Start/End: Original strand, 22971414 - 22971458
Alignment:
Q  355 aatggatttaattgatggacggaggtaatttaaatgatcaaattg 399  Q
    |||||||||||||||| ||||||||||||||||| || |||||||    
T  22971414 aatggatttaattgatcgacggaggtaatttaaaagaccaaattg 22971458  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 23816984 - 23816940
Alignment:
Q  355 aatggatttaattgatggacggaggtaatttaaatgatcaaattg 399  Q
    |||||||||||||||| ||||||||||||||||| || |||||||    
T  23816984 aatggatttaattgatcgacggaggtaatttaaaagaccaaattg 23816940  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 13324584 - 13324512
Alignment:
Q  232 ttttgatgatgaaggtgatgaatgttgcttggtttattgataaagatgatgaatgttgctggtttgatgatga 304  Q
    ||||||||||||||||||||||| ||  | ||||||| ||| |||||||||||| ||   |||||||||||||    
T  13324584 ttttgatgatgaaggtgatgaatttttatgggtttatggatgaagatgatgaattttatgggtttgatgatga 13324512  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 364
Target Start/End: Original strand, 13325386 - 13325476
Alignment:
Q  274 aagatgatgaatgttgctggtttgatgatgaacatgatg-aggagagatgaatgttaacattttttccacaaaatttaacataatggattta 364  Q
    |||||||||||| ||  ||||||||||||||| || ||| ||| ||||||||||||||  |||||| ||||| |||||||  ||||||||||    
T  13325386 aagatgatgaattttcttggtttgatgatgaagataatgaaggggagatgaatgttaatgtttttt-cacaagatttaacggaatggattta 13325476  T

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