View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14836_low_15 (Length: 347)
Name: NF14836_low_15
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14836_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 36717645 - 36717341
Alignment:
| Q |
16 |
aatgaaactcatttttatttcatcttcttaattacgtcattagtgcaatttataccaaattgcttttccaagaactttttccacaatttatctcttatag |
115 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||| |
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|
| T |
36717645 |
aatgaaactcttttttctttcatcttcttaactacttcattagtgcaatttataccaaactgcttttcaaagaattttttccacaatttatcagttatag |
36717546 |
T |
|
| Q |
116 |
ggctcaaatccatcccttcacttgccttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgact |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36717545 |
ggctcaaatccatcccttcacttgccttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgact |
36717446 |
T |
|
| Q |
216 |
aacatctccaaggtattttacattttatcaatagctttctcaacacaaagttcaaccaaagatgtttgatcctttctcttcatcataacaggattccttt |
315 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717445 |
aacatctccaaggtattttaca--ttatcaatagctttctcaacacaaagatcaaccaaagatgtttgatcctttctcttcatcataacaggattccttt |
36717348 |
T |
|
| Q |
316 |
gaaacaa |
322 |
Q |
| |
|
||||||| |
|
|
| T |
36717347 |
gaaacaa |
36717341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 33 - 339
Target Start/End: Complemental strand, 1352595 - 1352291
Alignment:
| Q |
33 |
tttcatcttcttaattacgtcattagtgcaatttataccaaattgcttttccaagaactttttccacaatttatctcttatagggctcaaatccatccct |
132 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
1352595 |
tttcatcttcttaactacttcattagtgcaatttataccaaattgcttctcaaagaactttttccacaattgatctgttatagggctcaaatccatccct |
1352496 |
T |
|
| Q |
133 |
tcacttgccttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtatt |
232 |
Q |
| |
|
| | ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1352495 |
ttatttgtcttctcaatatgcatcaactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtatt |
1352396 |
T |
|
| Q |
233 |
ttacattttatcaatagctttctcaacacaaagttcaaccaaagatgtttgatcctttctcttcatcataacaggattcctttgaaacaaaagcagtgat |
332 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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|
| T |
1352395 |
ttaca--ttatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcaccgat |
1352298 |
T |
|
| Q |
333 |
gatgatg |
339 |
Q |
| |
|
||||||| |
|
|
| T |
1352297 |
gatgatg |
1352291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 1357733 - 1357444
Alignment:
| Q |
16 |
aatgaaactcatttttatttcatcttcttaattacgtcattagtgcaatttataccaaattgcttttccaagaactttttccacaatttatctcttatag |
115 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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|
| T |
1357733 |
aatgaaactcttttttctttcatcttcttaactacttcattagtgcaatttataccaaattgcttttcaaagaactttttccacaatttatctgttatag |
1357634 |
T |
|
| Q |
116 |
ggctcaaatccatcccttcacttgccttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgact |
215 |
Q |
| |
|
|||||||||||||||||| | | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1357633 |
ggctcaaatccatcccttgagtggacttctcaatatgcatcaactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgact |
1357534 |
T |
|
| Q |
216 |
aacatctccaaggtattttacattttatcaatagctttctcaacacaaagttcaaccaaagatgtttgatcctttctcttcatcataacagg |
307 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
1357533 |
aacatctccaaggtattttaca--ttatcaatagctttctcaacacaaagatcaaccaaacatgtttgatcctttctcttcatcataacagg |
1357444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 2041045 - 2041366
Alignment:
| Q |
16 |
aatgaaactcatttttatttcatcttcttaattacgtcattagtgcaatttataccaaattgcttttccaagaactttttccacaatttatctcttatag |
115 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||| || ||||||||| ||||||||| |||| |||||| |
|
|
| T |
2041045 |
aatgaaactcttttttctttcatcttcttaactacttcattagtgcaatttataccaaactgcttctcaaagaactttctccacaattgatctgttatag |
2041144 |
T |
|
| Q |
116 |
ggctcaaatccatcccttcacttgccttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgact |
215 |
Q |
| |
|
|||||||||||||||||| | | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2041145 |
ggctcaaatccatcccttgagtggacttctcaatatgcatcaactggtcaagtgtgcagtgaggcaagattctctcaagcatatcatgatcaacatgact |
2041244 |
T |
|
| Q |
216 |
aacatctccaaggtattttacattttatcaatagctttctcaacacaaagttcaaccaaagatgtttgatcctttctcttcatcataacaggattccttt |
315 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2041245 |
aacatctccaaggtattttaca--ttatcaatacctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattccttt |
2041342 |
T |
|
| Q |
316 |
gaaacaaaagcagtgatgatgatg |
339 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
2041343 |
gaaacaaaagcaccgatgatgatg |
2041366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 33 - 253
Target Start/End: Complemental strand, 1364546 - 1364328
Alignment:
| Q |
33 |
tttcatcttcttaattacgtcattagtgcaatttataccaaattgcttttccaagaactttttccacaatttatctcttatagggctcaaatccatccct |
132 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
1364546 |
tttcatcttcttaactacttcattagtgcaatttataccaaattgcttctcaaagaactttttccacaattgatctgttatagggctcaaatccatccct |
1364447 |
T |
|
| Q |
133 |
tcacttgccttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtatt |
232 |
Q |
| |
|
| | | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1364446 |
tgagtggacttctcaatatgcatcaactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtatt |
1364347 |
T |
|
| Q |
233 |
ttacattttatcaatagcttt |
253 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
1364346 |
ttaca--ttatcaatagcttt |
1364328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 7e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 24620348 - 24620630
Alignment:
| Q |
16 |
aatgaaactcatttttatttcatcttcttaattacgtcattagtgcaatttataccaaattgcttttccaagaactttttccacaatttatctcttatag |
115 |
Q |
| |
|
||||||||| ||||| |||||| | ||||| ||| ||||| |||||| |||||||||| |||||||| | ||||||||||||| ||||| |||| |
|
|
| T |
24620348 |
aatgaaactattttttctttcatatccttaactacttcatttgtgcaaattataccaaactgcttttcaataaactttttccacagtttattcgatatat |
24620447 |
T |
|
| Q |
116 |
ggctcaaatccatcccttcacttgccttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgact |
215 |
Q |
| |
|
||||||||||||||| |||| | ||||||||||||||||| | | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24620448 |
ggctcaaatccatcc-ttcattggccttctcaatatgcatgttccggtcaagtgtgcagtgaggcaagattcactcaagcatatgatgatcaacatgact |
24620546 |
T |
|
| Q |
216 |
aacatctccaaggtattttacattttatcaatagctttctcaacacaaagttcaaccaaagatgtttgatcctttctcttcatcat |
301 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24620547 |
aacatctccaaggtattttaca--ttatcaatagctttctcaacacaaagatcaaccaaatatgtttgatcctttctcttcatcat |
24620630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 279
Target Start/End: Original strand, 18180117 - 18180255
Alignment:
| Q |
139 |
gccttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacat |
238 |
Q |
| |
|
|||||||| |||||| ||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||| ||| ||||| |||||||||| ||| | |
|
|
| T |
18180117 |
gccttctcgatatgcgtcaactggtcaagtgtgcagtgtggcaagattcgttcaagcagatgatgatcaacaggaccaacatttccaaggtatcttaaa- |
18180215 |
T |
|
| Q |
239 |
tttatcaatagctttctcaacacaaagttcaaccaaagatg |
279 |
Q |
| |
|
||||| |||||| | | ||||||||| ||||||| ||||| |
|
|
| T |
18180216 |
-ttatctatagctgtttgaacacaaagatcaaccagagatg |
18180255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 18179911 - 18180026
Alignment:
| Q |
16 |
aatgaaactcatttttatttcatcttcttaattacgtcattagtgcaatttataccaaattgcttttccaagaactttttccacaatttatctcttatag |
115 |
Q |
| |
|
||||| |||| ||||| | ||||| || |||||| ||||| |||||| |||||||||| |||||||| |||||||||||||||||||||||| ||| | |
|
|
| T |
18179911 |
aatgacactcttttttctgtcatcctcctaattatttcatttgtgcaacttataccaaactgcttttcaaagaactttttccacaatttatctgttaccg |
18180010 |
T |
|
| Q |
116 |
ggctcaaatccatccc |
131 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18180011 |
ggctcaaatccatccc |
18180026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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