View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14836_low_18 (Length: 305)
Name: NF14836_low_18
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14836_low_18 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 7432215 - 7432519
Alignment:
| Q |
1 |
aaatcataagaaacaataaagtatggactttccctataaaattgaatagaggtcgaccaattaattgtgccactaacaaaatttcccattctctcaatag |
100 |
Q |
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| T |
7432215 |
aaatcataagaaacaataaagtatggactttccctataaaattcaatagaggtcaaccaattaattgtgccacttacaaattttcccgttctctcaatag |
7432314 |
T |
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| Q |
101 |
ggacaccaccaaaaggaaactcagggatgattttccaataattggtacccagtgtatgaaccttcacttttgttttgttaaccaaattaccactactttc |
200 |
Q |
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| T |
7432315 |
ggacaccgccaaaaggaaactcagggatgattttccaataattggtacccagtgtatgaaccttcacttttgttttgttaaccaaattaccactactttc |
7432414 |
T |
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| Q |
201 |
acgtattgagcacctaaatacaataatcaccttgtaattatcactaaatgaatcatagccaaaaccaaacttcatcgtctggatagatatattgcgttgc |
300 |
Q |
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| T |
7432415 |
acgtattgagcacctaaaaacaataatcaccttgtaattatcactaaatgaatcatagccaaaaccaaacgtcatcatctggatagaaatattgcgtggc |
7432514 |
T |
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| Q |
301 |
ctttc |
305 |
Q |
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| T |
7432515 |
ctttc |
7432519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 196
Target Start/End: Original strand, 2686531 - 2686671
Alignment:
| Q |
56 |
accaattaattgtgccactaacaaaatttcccattctctcaatagggacaccaccaaaaggaaactcagggatgattttccaataattggtacccagtgt |
155 |
Q |
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| T |
2686531 |
accaattaatagtgccactgacaaatttacctgatcttgcaacagggaaaacaccaaaaggaaactcatggatgtttttccaaatattagaacccaaagt |
2686630 |
T |
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| Q |
156 |
atgaaccttcacttttgttttgttaaccaaattaccactac |
196 |
Q |
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| T |
2686631 |
atgaacctttacttcagatttgtgaacccaattatcactac |
2686671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 167
Target Start/End: Complemental strand, 13479425 - 13479305
Alignment:
| Q |
47 |
tagaggtcgaccaattaattgtgccactaacaaaatttcccattctctcaatagggacaccaccaaaaggaaactcagggatgattttccaataattggt |
146 |
Q |
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| T |
13479425 |
tagaggccaaccaattaatcctgccactcacaaattttccagatttctcaacaggcataacaccaaagggaaactcctgaatggttttccaaaaatgggt |
13479326 |
T |
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| Q |
147 |
acccagtgtatgaaccttcac |
167 |
Q |
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| T |
13479325 |
acccaatgtatgaaccttcac |
13479305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 2678618 - 2678684
Alignment:
| Q |
56 |
accaattaattgtgccactaacaaaatttcccattctctcaatagggacaccaccaaaaggaaactc |
122 |
Q |
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| T |
2678618 |
accaattaatagtgccactaacaaattttcccgatcttccaaaagggaaaacaccaaaaggaaactc |
2678684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 1078386 - 1078519
Alignment:
| Q |
45 |
aatagaggtcgaccaattaattgtgccactaacaaaatttccc-attctctcaatagggacaccaccaaaaggaaactcagggatgattttccaataatt |
143 |
Q |
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| T |
1078386 |
aatagaggtcaaccaattaatcgtgccactcagaaattttccagattgtc-caattgggacaacaccaaaaggaaactcttgaatgcttttccaagaatt |
1078484 |
T |
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| Q |
144 |
ggtacccagtgtatgaaccttcacttttgttttgt |
178 |
Q |
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| T |
1078485 |
ggtacccaatgtatgaatcttcacttcagttttgt |
1078519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 2067464 - 2067511
Alignment:
| Q |
228 |
caccttgtaattatcactaaatgaatcatagccaaaaccaaacttcat |
275 |
Q |
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| T |
2067464 |
caccttgtaagtatctctaaaagaatcatagccaaaaccaaacgtcat |
2067511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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