View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14836_low_22 (Length: 278)
Name: NF14836_low_22
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14836_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 28917230 - 28917398
Alignment:
| Q |
1 |
gcagtgcctacaaaatcctttggttgttttgacagtagcaaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagcacctaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28917230 |
gcagtgcctacaaaatcctttggttgttttgacagtagcaaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagcacctaaac |
28917329 |
T |
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| Q |
101 |
ttcgatgctctaccgcaaaggtagcaaaaatgggaacctataaaattattcaaaagtcattcggcatcc |
169 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28917330 |
ttcgatgctctaccgcaaaggtagcaaaaatgggaacctataaaattattcaaaagtcattcggcatcc |
28917398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 28926493 - 28926661
Alignment:
| Q |
1 |
gcagtgcctacaaaatcctttggttgttttgacagtagcaaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagcacctaaac |
100 |
Q |
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|||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |
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| T |
28926493 |
gcagtgcctacaaaatcctttgtttcttttgacagtggcaaattcagcatcatagaagcatcttccacaaacagctattgggcaacacaagcacataaac |
28926592 |
T |
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| Q |
101 |
ttcgatgctctaccgcaaaggtagcaaaaatgggaacctat-aaaattattcaaaagtcattcggcatc |
168 |
Q |
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| T |
28926593 |
ttcgatgctctaccgcaaaggtagcaataatgggaacctataaaaattattcaaaagccattcagcatc |
28926661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 28893456 - 28893622
Alignment:
| Q |
1 |
gcagtgcctacaaaatcctttggttgttttgacagtagcaaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagcacctaaac |
100 |
Q |
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| T |
28893456 |
gcagtgcctacaaaatcctctgtttcttttgacaagagcaaattcagcaccatggaagcattttctacaaaaagctattgggcagcacaagcacataaac |
28893555 |
T |
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| Q |
101 |
ttcgatgctctaccgcaaaggtagcaaaaatgggaacctataaaattattcaaaagtcattcggcat |
167 |
Q |
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|||||||||| | ||| || ||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
28893556 |
ttcgatgctccatggcatccgttacaataatgggaacctataaaattattcaaaagtcattcagcat |
28893622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 28903460 - 28903613
Alignment:
| Q |
1 |
gcagtgcctacaaaatcctttggttgttttgacagtagcaaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagcacctaaac |
100 |
Q |
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|||||||||||||||||||||| || ||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||||| |||||| ||||| |
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| T |
28903460 |
gcagtgcctacaaaatcctttgtttcctttgacaagagcaaattcagcaccatagaagcattttccacaaaaagctattgtgcaacacaagcacataaac |
28903559 |
T |
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| Q |
101 |
ttcgatgctctaccgcaaaggtagcaaaaatgggaacctat-aaaattattcaa |
153 |
Q |
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|| ||| || |||||| |||||||| |||||||| |||| |||||||||||| |
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| T |
28903560 |
tttgatattccaccgcattggtagcaagaatgggaagctataaaaattattcaa |
28903613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 28936696 - 28936865
Alignment:
| Q |
1 |
gcagtgcctacaaaatcctttggttgttttgacagtagcaaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagcacctaaac |
100 |
Q |
| |
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|||||||| ||||||||||||| || ||||||| |||||||| ||||| | | | |||| ||||||||||||||| ||||||| || |||||| ||||| |
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| T |
28936696 |
gcagtgcccacaaaatcctttgtttcgtttgacattagcaaatacagcaccctggtagcaatttccacaaacagcttttgggcagcacaagcacataaac |
28936795 |
T |
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| Q |
101 |
ttcgatgctctaccgcaaaggtagcaaaaatgggaacc--tataaaattattcaaaagtcattcggcatc |
168 |
Q |
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|||| | ||||| ||| | ||||||| | |||||||| ||||||||||||||||| | |||| ||||| |
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| T |
28936796 |
ttcggttttctacggcatatgtagcaatagtgggaacctatataaaattattcaaaatttattcagcatc |
28936865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 28917463 - 28917495
Alignment:
| Q |
234 |
gaatgaatttaatcacaacaacctacacaggtt |
266 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
28917463 |
gaatgaatttaatcacaacaacctacacaggtt |
28917495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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