View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14836_low_24 (Length: 271)
Name: NF14836_low_24
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14836_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 3 - 256
Target Start/End: Original strand, 36416504 - 36416757
Alignment:
| Q |
3 |
atgaagcccacttaagggttttagtatacacattacacacacaaaaagctcaaaatcaaataagagagtttatattaatagtactattttaaccaaccaa |
102 |
Q |
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| T |
36416504 |
atgaagcccacttaagggttttagtatacacattacacacacaaaaagctcaaaatcaaataagagagtttatattaatagtactattttaaccaaccaa |
36416603 |
T |
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| Q |
103 |
aaccctataagaatagaaaatgggtgagaaagaggagggtaaaaaatatacctttaaagcagaaaacatgagttgggtaggtgggtgtggaaaatgccat |
202 |
Q |
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| T |
36416604 |
aaccctataagaatagaaaatgggtgagaaagaggagggtaaaaaatatacctttaaagcagaaaacatgagttggggaggtgggtgtggaaaatgccat |
36416703 |
T |
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| Q |
203 |
ggcaggagtgtgaagatcactgattggtaaatttgtattgtgcagagagaacaa |
256 |
Q |
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| T |
36416704 |
ggcaggagtgtgaaggccactgattggtaaatttgtattgtgcagagagaacaa |
36416757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 36415447 - 36415412
Alignment:
| Q |
23 |
ttagtatacacattacacacacaaaaagctcaaaat |
58 |
Q |
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| T |
36415447 |
ttagtatacacattacacacacaaaaagcttaaaat |
36415412 |
T |
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