View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14836_low_25 (Length: 267)
Name: NF14836_low_25
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14836_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 43399576 - 43399394
Alignment:
| Q |
19 |
aacaaatttacaaccattaaaagcctattgttacaaaacatatatacattatcgaatgtgtaatcatgatttgtttgaggagaggggaaaatctaaagaa |
118 |
Q |
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| T |
43399576 |
aacaaatttacaaccattaaaagcctattgttacaaaacata----cattatcgaatgtgtaatcatgatttgtttgaggagaggggaaaatctaaagaa |
43399481 |
T |
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| Q |
119 |
gttaataaagcacttagcaattaacaattctgctggcagtgcttcttttcttataggccatcaattcggagtaagaattttcataatgga |
208 |
Q |
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| T |
43399480 |
gctaa---agcacttagcaattaacaattctgctggcagtgcttcttttcttataggccatcaattcggagtaagaattttcataatgga |
43399394 |
T |
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