View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14836_low_39 (Length: 224)

Name: NF14836_low_39
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14836_low_39
NF14836_low_39
[»] chr8 (5 HSPs)
chr8 (20-82)||(11990121-11990183)
chr8 (123-176)||(11991260-11991313)
chr8 (18-67)||(12003993-12004042)
chr8 (19-62)||(11997688-11997731)
chr8 (18-63)||(12009526-12009571)


Alignment Details
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 11990121 - 11990183
Alignment:
Q  20 tctttaatttcaactccgctaatcccagcattgttaacctacacaatatgtacaaattaaaca 82  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  11990121 tctttaatttcaactccgccaatccctgcattgttaacctacacaatatgtacaaattaaaca 11990183  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 11991260 - 11991313
Alignment:
Q  123 ctcctatcctacacctcaacctcatgttatcttgttttcattttctgtggaccc 176  Q
    |||||||| ||  ||||||||||||||||||||||||||||||| |||||||||    
T  11991260 ctcctatcttatccctcaacctcatgttatcttgttttcattttttgtggaccc 11991313  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 12003993 - 12004042
Alignment:
Q  18 tgtctttaatttcaactccgctaatcccagcattgttaacctacacaata 67  Q
    ||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  12003993 tgtctttaatttcaattccgttaatcccagcattgttaacctacaaaata 12004042  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 11997688 - 11997731
Alignment:
Q  19 gtctttaatttcaactccgctaatcccagcattgttaacctaca 62  Q
    |||||||| |||||| ||||||||||||||||||||||||||||    
T  11997688 gtctttaacttcaaccccgctaatcccagcattgttaacctaca 11997731  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 12009526 - 12009571
Alignment:
Q  18 tgtctttaatttcaactccgctaatcccagcattgttaacctacac 63  Q
    |||| |||| |||||||||||||||||| |||||||||||||||||    
T  12009526 tgtcgttaacttcaactccgctaatcccggcattgttaacctacac 12009571  T

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