View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14836_low_4 (Length: 478)
Name: NF14836_low_4
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14836_low_4 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 134 - 459
Target Start/End: Complemental strand, 31523519 - 31523198
Alignment:
| Q |
134 |
acaagatatgagggctagttataatgtgcactgatgtaacaatctagaatgttggttaactatacaatcttgagattttccagaaaatttctgaatttgt |
233 |
Q |
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| T |
31523519 |
acaagatatgagggctagttataatgtgcactgatgtaacaatctagaatgttggttaactatacaatcttgagattttccagaaaatttctgaatttgt |
31523420 |
T |
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| Q |
234 |
gataggccctttagggttcttttacatacttgtattatgtgaaacaatatctgattagtccttggattaatccttctagggctgaataccgagttttcaa |
333 |
Q |
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| T |
31523419 |
gataggcactttagggttcttttacatacttgtattatgtgaaacaatatctgattagtccttggattaatccttctagggctgaataccgagtttccaa |
31523320 |
T |
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| Q |
334 |
aacnnnnnnntacaacacaattgaaaaaatgtatcagatacatcaactgcaaaaatgtatcagaaaatagataaattaccggaaacagaataagatagta |
433 |
Q |
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| T |
31523319 |
aacaaaaaaatacaacacaattgaaaaaatgtatcagatacatcaactgcaaaaatgtattagaaaatagataaattaccggaaacagaataagata--- |
31523223 |
T |
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| Q |
434 |
cgtaatctattattgtgagcatactg |
459 |
Q |
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| T |
31523222 |
-gtaatctattattctgagcatactg |
31523198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 31523608 - 31523517
Alignment:
| Q |
1 |
gaggaaatgaaattaaaaaacttcaattccaatttcaaaagcaatcatgtgatataagataattatataacacaatgttaacaactttcaca |
92 |
Q |
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| T |
31523608 |
gaggaaatgaaattaaaaaacttcaattcaaatttcaaaagcaatcatgtgatataagataattatataacacattattaacaactttcaca |
31523517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 378 - 459
Target Start/End: Original strand, 52303 - 52380
Alignment:
| Q |
378 |
aactgcaaaaatgtatcagaaaatagataaattaccggaaacagaataagatagtacgtaatctattattgtgagcatactg |
459 |
Q |
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| T |
52303 |
aactgaaaaaatgtataggaaaatagataaattaccggaaacagaataagata----gtaatctattattgtgagcatactg |
52380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 52060 - 52126
Alignment:
| Q |
170 |
taacaatctagaatgttggttaactatacaatcttgagattttccagaaaatttctgaatttgtgat |
236 |
Q |
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| T |
52060 |
taacaatctaaaatgttggtaaacaatacaatattgagaatttccagaaaatttcttaatttgtgat |
52126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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