View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14836_low_42 (Length: 220)
Name: NF14836_low_42
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14836_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 12346264 - 12346461
Alignment:
| Q |
16 |
aatatttgttaggccactggctacaatgtttcctctcgtaccgctcaccatttatatctacacataaaatccattagtataattggtctgaggatgtgtg |
115 |
Q |
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| T |
12346264 |
aatatttgttaggccaccggccacaatgtttcct-tcgtaccgctcaccatttatatctacgaataaaatccattagtataattggtctgagggtgtgtg |
12346362 |
T |
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| Q |
116 |
ttaaagactcctacgttgaataagagatggtatgggcatatgtttatagatgagggcaattcttatctcaaaagccagtttttatgagattgtgttagg |
214 |
Q |
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| T |
12346363 |
ttaaagactcctacattgaataagagatggtatgggcatatgtttatagatgggggcaaatcttatctcaaaagccagtttttatgagattgtgttagg |
12346461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 12337221 - 12337322
Alignment:
| Q |
111 |
gtgtgttaaagactcctacgttgaataagagatggtatgggcatatgtttatagatgagggcaattcttatctcaaaagccagtttttatgagattgtgt |
210 |
Q |
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| T |
12337221 |
gtgtgttaaagacttctacattgaataagagatggtttgggtaaataattatagatgaaggcaattctcatcttaaaagtcag-ttttatgagattgtgt |
12337319 |
T |
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| Q |
211 |
tag |
213 |
Q |
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||| |
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| T |
12337320 |
tag |
12337322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 12337149 - 12337217
Alignment:
| Q |
16 |
aatatttgttaggccactggctacaatgtttcctctcgtaccgctcaccatttatatctacacataaaa |
84 |
Q |
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||||||||||||||||||||| | || |||||| |||||||||||||| |||||||||||| ||||||| |
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| T |
12337149 |
aatatttgttaggccactggccataaggtttcccctcgtaccgctcacaatttatatctacgcataaaa |
12337217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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