View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14836_low_8 (Length: 418)
Name: NF14836_low_8
Description: NF14836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14836_low_8 |
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| [»] scaffold0070 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 25603237 - 25603642
Alignment:
| Q |
1 |
gcagaagctagaatagtccaatggtgaatggaccaatatgcattacaaatttagtgaatttggacatttattagtgaatttttgtaaacgatgtcggaga |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25603237 |
gcagaaactagaatagtccaatggtgaatggaccaatatgcattacaaatttagtgaatttggacatttattagcgaatttttgtaaacgatgtcggaga |
25603336 |
T |
|
| Q |
101 |
caaaggccagaacaacaatgcatgatatatcatcttagagtttaattactagaagaaattgnnnnnnnctaacatccattttgcttgttgattttgggaa |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25603337 |
caaaggccggaacaacaatgcatgatatatcatcttagagtttaattactagaagaaattgtttttttctaacatccattttgcttgttgattttgggaa |
25603436 |
T |
|
| Q |
201 |
aacaatgtatgatatataatctgtttttgtacttttgacgcaggataatgatttcaagcttaggatctgaaagttcatcttcttcttcatatattcccct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
25603437 |
aacaatgtatgatatataatctgtttttgtacttttgaggcaggataatgatttcaagcttaggatctgaaagttcatcttcatcttcatatatttccct |
25603536 |
T |
|
| Q |
301 |
gtcttgggcctttaatatgtctatgaacatcttcaacctcaatcattttaccacaccacaacttgaaacttatattagatacatttgtgaaatttaaagc |
400 |
Q |
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||||||||||||||||||||||||||||||||||| | ||| ||| || | |||||||| ||||||| |||||||||| ||||||| |||| ||||||| |
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| T |
25603537 |
gtcttgggcctttaatatgtctatgaacatcttcatcatcattcaattagcaacaccacatcttgaaaattatattagagacatttgagaaacttaaagc |
25603636 |
T |
|
| Q |
401 |
ttctca |
406 |
Q |
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|||||| |
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| T |
25603637 |
ttctca |
25603642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 178 - 309
Target Start/End: Complemental strand, 24914357 - 24914227
Alignment:
| Q |
178 |
attttgcttgttgattttgggaaaacaatgtatgatatataatctgtttttgtacttttgacgcaggataatgatttcaagcttaggatctgaaagttca |
277 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
24914357 |
attttgcttgttgattttgggaaaa-aatgtatgatatataatctgcttttgtacttttgacacaggataatgatttcaagcttaggatcttaaagttca |
24914259 |
T |
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| Q |
278 |
tcttcttcttcatatattcccctgtcttgggc |
309 |
Q |
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||||| |||||||||||| || |||| ||||| |
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| T |
24914258 |
tcttcatcttcatatatttccttgtcctgggc |
24914227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 201 - 282
Target Start/End: Original strand, 25385397 - 25385478
Alignment:
| Q |
201 |
aacaatgtatgatatataatctgtttttgtacttttgacgcaggataatgatttcaagcttaggatctgaaagttcatcttc |
282 |
Q |
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| T |
25385397 |
aacaatgcatgatatataatatatttttgtacttttgacacaagataatgattccaagcttaggatctgaaagttcatcttc |
25385478 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 25321369 - 25321470
Alignment:
| Q |
8 |
ctagaatagtccaatggtgaatggaccaatatgcattacaaatttagtga--atttggacatttattagtgaatttttgtaaacgatgtcggagacaaag |
105 |
Q |
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||||||| ||||| |||||||||||||| ||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
25321369 |
ctagaatcatccaaaggtgaatggaccaacatgcatttgaaatttagtttttatttgtacatttattagtgaatttttgtaaaagatgttagagacaaag |
25321468 |
T |
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| Q |
106 |
gc |
107 |
Q |
| |
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|| |
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| T |
25321469 |
gc |
25321470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 405
Target Start/End: Complemental strand, 24914208 - 24914105
Alignment:
| Q |
302 |
tcttgggcctttaatatgtctatgaacatcttcaacctcaatcattttaccacaccacaacttgaaacttatattagatacatttgtgaaatttaaagct |
401 |
Q |
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|||| ||| |||||||||||||||| |||||||| | ||| ||| || | |||||||| ||||||| |||||||||| ||||||| |||| || ||||| |
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| T |
24914208 |
tctttggcttttaatatgtctatgaccatcttcatcatcattcaattagcaacaccacatcttgaaaattatattagagacatttgagaaacttgaagct |
24914109 |
T |
|
| Q |
402 |
tctc |
405 |
Q |
| |
|
|||| |
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|
| T |
24914108 |
tctc |
24914105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 25338206 - 25338307
Alignment:
| Q |
171 |
aacatccattttgcttgttgattttgggaaaacaatgtatgatatataatctgtttttgtacttttgacgcaggataatgatttcaagcttaggatctga |
270 |
Q |
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|||| ||||||| |||||||||| | ||| ||||||||||||||||||| || ||||||||||||| || |||||| |||||| | |||||||| || |
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| T |
25338206 |
aacacccattttttttgttgatttgaagcaaataatgtatgatatataatctattgttgtacttttgacacatgataattatttcaggtttaggatcaga |
25338305 |
T |
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| Q |
271 |
aa |
272 |
Q |
| |
|
|| |
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| T |
25338306 |
aa |
25338307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 25489219 - 25489314
Alignment:
| Q |
67 |
tttattagtgaatttttgtaaacgatgtcg-gagacaaaggccagaacaacaatgcatgatatatcatcttagagtttaattactagaagaaattg |
161 |
Q |
| |
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|||||| ||||||||||||||| |||||| |||||||| || |||||| || |||||||||||||| | |||||||||||| |||| ||||| |
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| T |
25489219 |
tttatttgtgaatttttgtaaaagatgtcaagagacaaaagcagcaacaactattcatgatatatcatcaaatagtttaattactggaagcaattg |
25489314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 18406 - 18323
Alignment:
| Q |
201 |
aacaatgtatgatatataatctgtttttgtacttttgacgcaggata--atgatttcaagcttaggatctgaaagttcatcttc |
282 |
Q |
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||||||| |||||||||||| | |||||||||||||||| || |||| |||||| |||||||||||||||||||||||||||| |
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| T |
18406 |
aacaatgcatgatatataatatatttttgtacttttgacacaagatataatgattccaagcttaggatctgaaagttcatcttc |
18323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 405
Target Start/End: Complemental strand, 18232 - 18141
Alignment:
| Q |
314 |
aatatgtctatgaacatcttcaacctcaatcattttaccacaccacaacttgaaacttatattagatacatttgtgaaatttaaagcttctc |
405 |
Q |
| |
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||||||||||||| |||||||| | ||| ||| || | |||||||| ||||||| |||||||||| ||||||| |||| || ||||||||| |
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| T |
18232 |
aatatgtctatgaccatcttcatcatcattcaattagcaacaccacatcttgaaaattatattagagacatttgagaaacttgaagcttctc |
18141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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