View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14837_high_1 (Length: 329)
Name: NF14837_high_1
Description: NF14837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14837_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 313
Target Start/End: Complemental strand, 45015251 - 45014950
Alignment:
| Q |
12 |
atagaaggagagaatcatgggaagaagagggaaaagaagatgagaatttgtttccagtgttttctgaaaggtcccaacaagatatgtctgccatagtatc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45015251 |
atagaaggagagaatcatgggaagaagagggaaaagaagatgagaatttgtttccagtgttttctgaaaggtcccaacaagatatgtctgccatagtatc |
45015152 |
T |
|
| Q |
112 |
tgctcttacacaagtcatgggcggcaacaataacaatgaaatgcatgaagcttcatcaatccataatattgaacaatctcagccaccacagcaagatcaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45015151 |
tgctcttacacaagtcatgggcggcaacaataacaatgaaatgcatgaagcttcatcaatccataatattgaacaatctcagccaccacagcaagatcaa |
45015052 |
T |
|
| Q |
212 |
ggtagttaagtgcactcactctcacacctttctacgattattgcnnnnnnnnnnnccttttgttttaattaatacgtgtaatacacattaatatattgcg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45015051 |
ggtagttaagtgcactcactctcacacctttctacgattattcttttttttttttccttttgttttaattaatacgtgtaatacacattaatatattgcg |
45014952 |
T |
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| Q |
312 |
tt |
313 |
Q |
| |
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|| |
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| T |
45014951 |
tt |
45014950 |
T |
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