View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14837_low_1 (Length: 770)
Name: NF14837_low_1
Description: NF14837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14837_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 711; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 1 - 756
Target Start/End: Original strand, 36745881 - 36746636
Alignment:
| Q |
1 |
agttggtggaatcctgctcaataatcatatggcttgcatccgctttccacgcagctgtcaatttcggacaatatccttacggtggtttaatcttgaaccg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36745881 |
agttggtggaatcctgctcaataatcatatggcttgcatccgctttccacgcagctgtcaatttcggacaatatccttacggtggtttaatcttgaaccg |
36745980 |
T |
|
| Q |
101 |
accaactatgacaaggaggttaattcctgaaaagggaaccaaagaatatgaagagatggagaaagatgaccaaagggcttatttgagaacaatcacacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36745981 |
accaactatgacaaggaggttaattcctgaaaagggaaccaaagaatatgaagagatggagaaagatgaccaaagggcttatttgagaacaatcacacca |
36746080 |
T |
|
| Q |
201 |
aagaccgaggctctcatcgaccttacggtgatagagatattgtcaaggcatgcttctgatgaagtttacttagggaaaagagagaatgatgaatggacag |
300 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36746081 |
aagaccgaggctctcattgaccttacggtgatagagatattgtcaaggcatgcttctgatgaagtttacttagggaaaagagagaatgatgaatggacag |
36746180 |
T |
|
| Q |
301 |
cagatgaaaaggcaagagtagccttcaaaaggtttgcaaagaagatggaagacatcgagnnnnnnntcgaaagcagaaacaaagaaccagatttgcttaa |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
36746181 |
cagatgaaaaggcaagagtagccttcaaaaggtttgcaaagaagatggaagacatcgagaaaaaaattgaaagcagaaacaaagaaccagatttgcttaa |
36746280 |
T |
|
| Q |
401 |
ccgaactggcccggttaagatgccctacactttgcttttacctaccagtggagaaggcttgacttgcagaggaattcccaatagtgtttctatctaagga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36746281 |
ccgaactggcccggttaagatgccctacactttgcttttacctaccagtggagaaggcttgacttgcagaggaattcccaatagtgtttctatctaagga |
36746380 |
T |
|
| Q |
501 |
tctctttaagctaccctacaagtattgttgctgcaactttcaataaaatacatagatgagactgatcttgtctatgtacaagtatgtttgtttgttaatc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36746381 |
tctctttaagctaccctacaagtattgttgctgcaactttcaataaaatacatagatgagactgatcttgtctatgtacatatatgtttgtttgttaatc |
36746480 |
T |
|
| Q |
601 |
aaatgttgtattttggtgttctagagtctggttttcttttgctgtaacctcaaataacacatgcatagatgaacattggtttatttatgcatgaatgtcc |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36746481 |
aaatgttgtattttggtgttctagagtctggttttctttttctgtaacctcaaataacacatgcatagatgaacattggtttatttatgcatgaatgtcc |
36746580 |
T |
|
| Q |
701 |
tgtttatgatcaaataaatgtgatttatcatagttaagtatttcctcttaattttg |
756 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
36746581 |
tgtttatgatcaaataagtgtgatttatcatagttaagtatttcctcttaattttg |
36746636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 535 - 578
Target Start/End: Original strand, 29014396 - 29014439
Alignment:
| Q |
535 |
aactttcaataaaatacatagatgagactgatcttgtctatgta |
578 |
Q |
| |
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|
| T |
29014396 |
aactttcaataaaatacatagatgagactgatgttgtctatgta |
29014439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 269
Target Start/End: Original strand, 42689650 - 42689873
Alignment:
| Q |
46 |
tccacgcagctgtcaatttcggacaatatccttacggtggtttaatcttgaaccgaccaactatgacaaggaggttaattcctgaaaagggaaccaaaga |
145 |
Q |
| |
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||||||||||||| ||||| ||||||||||||||||| ||||| || | ||||| |||||||| | || || ||| ||||||| | ||||| | | |
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| T |
42689650 |
tccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaactatcagtagaagattacttcctgaggaaggaactgcaca |
42689749 |
T |
|
| Q |
146 |
atatgaagagatggagaaagatgaccaaagggcttatttgagaacaatcacaccaaagaccgaggctctcatcgaccttacggtgatagagatattgtca |
245 |
Q |
| |
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|||||| || |||| ||| | |||| |||||| |||||||||||||| || ||| || |||| || |||||| | |||||||| ||||||||| |
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| T |
42689750 |
atatgatgaaatggtgaagagtcctcaaaaggcttacttgagaacaatcacgccgaagtttcagactcttattgacctttcagtgatagaaatattgtca |
42689849 |
T |
|
| Q |
246 |
aggcatgcttctgatgaagtttac |
269 |
Q |
| |
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|| ||||||||||||||||||||| |
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| T |
42689850 |
agacatgcttctgatgaagtttac |
42689873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 42692028 - 42691979
Alignment:
| Q |
216 |
atcgaccttacggtgatagagatattgtcaaggcatgcttctgatgaagt |
265 |
Q |
| |
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||||||||| | || ||||| |||||||||||||| |||||||||||||| |
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| T |
42692028 |
atcgacctttccgttatagaaatattgtcaaggcacgcttctgatgaagt |
42691979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 497
Target Start/End: Complemental strand, 6361781 - 6361701
Alignment:
| Q |
417 |
aagatgccctacactttgcttttacctaccagtggagaaggcttgacttgcagaggaattcccaatagtgtttctatctaa |
497 |
Q |
| |
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|||||||| |||||| |||||| ||| | |||| ||||| |||||||||||||| |||||||| ||||| ||||||||| |
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| T |
6361781 |
aagatgccttacactctgctttatccttctagtgaggaaggattgacttgcagaggcattcccaacagtgtctctatctaa |
6361701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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