View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14837_low_2 (Length: 561)
Name: NF14837_low_2
Description: NF14837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14837_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 8392973 - 8393231
Alignment:
| Q |
13 |
cacagatacatacacaaattaaaagaaggaaaataattcttcaacacccaaaaccatttta-----ccactagagagaaaaagaaatcaagagagtaaaa |
107 |
Q |
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| T |
8392973 |
cacatatacatacacaaattaaaagaaggaaaataattcttcaacacccaaaaccattttactttaccactagagagaaaaagaaatcaagagagtaaaa |
8393072 |
T |
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| Q |
108 |
taatacatatggtgaatatatgataataagaaagagtggtaaaaggaaaatgagatgttgaatatctgtatgaaaaataaaa-tgggtgtttttgtgagt |
206 |
Q |
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| T |
8393073 |
taatacatatggtgaatatatgataataagaaagagtggtaaaaggaaaatgagatgttgaatattggtatgaaaaataaaagggggtgtctatgtgagt |
8393172 |
T |
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| Q |
207 |
ttaatttaactgatatgtacaatgcataatatatagtcaaaggtatgaggttcatatct |
265 |
Q |
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| T |
8393173 |
ttaatttagctggtatgtacaatgcataatatatagttaaaggtatgagattcaaatct |
8393231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 326 - 543
Target Start/End: Original strand, 8393286 - 8393498
Alignment:
| Q |
326 |
gaacaccgaaattactagaaaacaagaggaaataacaaacccaatgattcccatttcccataccataccataccacaccatctcttttcttctccacact |
425 |
Q |
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| T |
8393286 |
gaacaccaaaattactagaaaacaagagaaaataacaaacccaatgattcccatttcccataccataccataccacaccctctcttttcttctccacact |
8393385 |
T |
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| Q |
426 |
caataaacaaaacttaatttattcacaacctaacatataacaataacaataacaatccaaaaacctcattgattcattcattcagcaatatatc-aagaa |
524 |
Q |
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| T |
8393386 |
caataaacaaaacttaatttattcacaacctaaaat------ataacaataacaatccaaaaacctgattcattgattgattctgcaatatatcaaagaa |
8393479 |
T |
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| Q |
525 |
aacaaactggagatgttag |
543 |
Q |
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| T |
8393480 |
aacaaactggagatgttag |
8393498 |
T |
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