View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14837_low_4 (Length: 245)
Name: NF14837_low_4
Description: NF14837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14837_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 43001127 - 43000907
Alignment:
| Q |
18 |
gtatgaaactataaccaaggaaaaataacattactaacgcatgaatgttgattcgtagtagtagtagtataaatgtgggtgaataatgatcaataaggaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43001127 |
gtatgaaactataaccaaggaaaaataacattactaacgcatgaatgttgattcgtagtagtagtggtataaatgtgggtgaataatgatcaataaggaa |
43001028 |
T |
|
| Q |
118 |
atacataattagctatggagaatttcgggtaacaacttaattccatacaagtgagggataggttcttggtttaccataattaagtgaatttcttatttgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43001027 |
atacataattagctatggagaatttcggttaacaacttaattccatacaagtgagggataggttcttggtttaccataattaagtgaatttcttatttgc |
43000928 |
T |
|
| Q |
218 |
tttgtggattctttgtcctat |
238 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
43000927 |
tttgtggattctttatcctat |
43000907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University