View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14838_high_1 (Length: 375)

Name: NF14838_high_1
Description: NF14838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14838_high_1
NF14838_high_1
[»] chr3 (12 HSPs)
chr3 (75-300)||(899975-900200)
chr3 (300-362)||(25644576-25644638)
chr3 (212-300)||(803214-803300)
chr3 (302-362)||(42641935-42641995)
chr3 (301-347)||(8541097-8541143)
chr3 (212-300)||(2686308-2686397)
chr3 (203-299)||(2696719-2696813)
chr3 (301-345)||(27813512-27813556)
chr3 (301-345)||(47278364-47278408)
chr3 (203-293)||(2459251-2459339)
chr3 (215-300)||(3754569-3754652)
chr3 (310-362)||(38233178-38233229)
[»] scaffold0001 (1 HSPs)
scaffold0001 (300-362)||(181480-181542)
[»] chr7 (10 HSPs)
chr7 (300-362)||(1076079-1076141)
chr7 (301-362)||(15234922-15234983)
chr7 (301-362)||(36723894-36723956)
chr7 (301-362)||(44945004-44945064)
chr7 (299-362)||(44970069-44970132)
chr7 (309-362)||(26942262-26942315)
chr7 (301-346)||(49017058-49017103)
chr7 (301-361)||(21809309-21809368)
chr7 (305-351)||(43080195-43080241)
chr7 (308-361)||(23086073-23086126)
[»] chr6 (3 HSPs)
chr6 (301-362)||(3418990-3419051)
chr6 (302-361)||(29968718-29968777)
chr6 (301-347)||(19292957-19293003)
[»] chr5 (6 HSPs)
chr5 (301-362)||(4428894-4428955)
chr5 (302-361)||(14028311-14028370)
chr5 (301-362)||(17549150-17549211)
chr5 (300-352)||(33061828-33061880)
chr5 (301-362)||(31736909-31736969)
chr5 (301-347)||(37022992-37023038)
[»] scaffold0097 (1 HSPs)
scaffold0097 (301-361)||(47597-47657)
[»] chr4 (6 HSPs)
chr4 (299-346)||(35187644-35187691)
chr4 (303-361)||(8823604-8823662)
chr4 (300-347)||(16204739-16204786)
chr4 (304-362)||(45071008-45071064)
chr4 (304-352)||(49084037-49084085)
chr4 (301-361)||(27993735-27993795)
[»] chr2 (4 HSPs)
chr2 (306-361)||(13284278-13284333)
chr2 (299-361)||(32164937-32164998)
chr2 (299-347)||(43822924-43822972)
chr2 (203-256)||(36577377-36577430)
[»] chr1 (7 HSPs)
chr1 (304-362)||(4198205-4198262)
chr1 (300-362)||(36565786-36565848)
chr1 (301-345)||(25160665-25160709)
chr1 (301-347)||(3712508-3712554)
chr1 (300-346)||(16632323-16632369)
chr1 (299-345)||(43671450-43671496)
chr1 (301-347)||(46671542-46671588)
[»] scaffold0648 (1 HSPs)
scaffold0648 (300-347)||(4604-4651)
[»] scaffold0274 (1 HSPs)
scaffold0274 (300-347)||(4074-4121)
[»] chr8 (1 HSPs)
chr8 (301-362)||(7011315-7011375)
[»] scaffold0006 (1 HSPs)
scaffold0006 (301-345)||(230291-230335)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 75 - 300
Target Start/End: Complemental strand, 900200 - 899975
Alignment:
Q  75 agacttataagtgccatcccttagatcatacacaatcaacttattttcccaatctcgatactcaatattcaagcaacacttgaccatccttaaacatatg 174  Q
    ||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  900200 agacttataagtgtcatcccttagatcataaacaatcaatttattttcccaatctcgatactcaatattcaagcaacacttgaccatccttaaacatatg 900101  T
Q  175 taatgcattggtcaaggtgcaagacttttaagaaacggtgaacaatttaatcgaagactctttgtttcaatattcattcatataacccaaacatcatgac 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  900100 taatgcattggtcaaggtgcaagacttttaagaaacggtgaacaatttaatcgaagactctttgtttcaatattcattcatataacccaaacatcatgac 900001  T
Q  275 aagaaatcatgcacaagcattccctc 300  Q
    ||||||||||||||||||||||||||    
T  900000 aagaaatcatgcacaagcattccctc 899975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 25644576 - 25644638
Alignment:
Q  300 ccaggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaatt 362  Q
    |||||||| |||||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  25644576 ccaggggcagatctctttggagaccctcagatgccattgcaccccccagttttaatataaatt 25644638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 803214 - 803300
Alignment:
Q  212 gtgaacaatttaatcgaagactctttgtttcaatattcattcatataacccaaacatcatgacaagaaatcatgcacaagcattccctc 300  Q
    |||||||| ||| || |||||||||| |||| |||||| ||||||  ||||||||||||| || |||||||||||||||||| ||||||    
T  803214 gtgaacaacttagtccaagactctttatttccatattctttcata--acccaaacatcatcaccagaaatcatgcacaagcaatccctc 803300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 362
Target Start/End: Complemental strand, 42641995 - 42641935
Alignment:
Q  302 aggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaatt 362  Q
    ||||||||||||||||||||||||| || ||||||||||||||| || ||| |||||||||    
T  42641995 aggggcggatctctttggagacccccaggtgccactgcacccccgaggttttatataaatt 42641935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 8541097 - 8541143
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcacccccca 347  Q
    ||||||||||||||||| |||||||| || |||||||||||||||||    
T  8541097 caggggcggatctctttagagacccccaggtgccactgcacccccca 8541143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 2686308 - 2686397
Alignment:
Q  212 gtgaacaatttaatcgaagactctttgtttcaatattcattcat-ataacccaaacatcatgacaagaaatcatgcacaagcattccctc 300  Q
    |||||||||||| || |||||||||| |||| |||||| ||||| |||||||||||||||| || | | |||| |||||| || ||||||    
T  2686308 gtgaacaatttattccaagactctttttttccatattccttcataataacccaaacatcatcaccacagatcaagcacaaacaatccctc 2686397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 299
Target Start/End: Original strand, 2696719 - 2696813
Alignment:
Q  203 taagaaacggtgaacaatttaatcgaagactctttgtttcaatattcattcatataacccaaacatcatgacaagaaatcatgcacaagcattccct 299  Q
    ||||| || ||||||||||||||| |||||||||| |||| |||||| |||  |||| |||||||||||||   ||||||| || |||||| |||||    
T  2696719 taagatacagtgaacaatttaatccaagactctttatttccatattccttc--ataatccaaacatcatgatcggaaatcaagcccaagcaatccct 2696813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 27813512 - 27813556
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcaccccc 345  Q
    ||||||||||||||||| |||||||| || |||||||||||||||    
T  27813512 caggggcggatctctttagagacccccaggtgccactgcaccccc 27813556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 47278408 - 47278364
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcaccccc 345  Q
    ||||||||||||||||| |||||||| || |||||||||||||||    
T  47278408 caggggcggatctctttagagacccccaggtgccactgcaccccc 47278364  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 293
Target Start/End: Complemental strand, 2459339 - 2459251
Alignment:
Q  203 taagaaacggtgaacaatttaatcgaagactctttgtttcaatattcattcatataacccaaacatcatgacaagaaatcatgcacaagca 293  Q
    ||||||||||| ||||||||  || |||||||||| |||| |||||| |||  |||| ||||||| |||||| |||||| ||| |||||||    
T  2459339 taagaaacggtaaacaattttgtccaagactctttatttccatattccttc--ataatccaaacaacatgaccagaaattatggacaagca 2459251  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 3754652 - 3754569
Alignment:
Q  215 aacaatttaatcgaagactctttgtttcaatattcattcatataacccaaacatcatgacaagaaatcatgcacaagcattccctc 300  Q
    ||||||||| || |||||||||| |||| |||||| ||||||  ||||||||||||  || |||| ||| ||||||||| ||||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcata--acccaaacatcaacaccagaagtcacgcacaagcaatccctc 3754569  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 38233229 - 38233178
Alignment:
Q  310 atctctttggagacccctagatgccactgcaccccccagttttaatataaatt 362  Q
    ||||||||||||||||| || |||||||||| | |||||||| ||||||||||    
T  38233229 atctctttggagacccccaggtgccactgca-ctcccagtttaaatataaatt 38233178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 181480 - 181542
Alignment:
Q  300 ccaggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaatt 362  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  181480 ccaggggcggatctctttggagacccccagatgccactgcaccccctagttttaatataaatt 181542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 1076141 - 1076079
Alignment:
Q  300 ccaggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaatt 362  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  1076141 ccaggggcggatctctttggagacccccagatgccactgcaccccccagtttttatataaatt 1076079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 15234983 - 15234922
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaatt 362  Q
    |||||||||||||||||||||||||| || |||| |||||||||| |||||| |||||||||    
T  15234983 caggggcggatctctttggagacccccaggtgcctctgcacccccaagtttttatataaatt 15234922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 36723894 - 36723956
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccac-tgcaccccccagttttaatataaatt 362  Q
    |||||||||||||||||||||||||| ||||||||| | | |||||||||||| |||||||||    
T  36723894 caggggcggatctctttggagacccccagatgccacttcccccccccagtttttatataaatt 36723956  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 44945004 - 44945064
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaatt 362  Q
    |||||||||||||||||||||||||| || ||||||| || ||||||||||| |||||||||    
T  44945004 caggggcggatctctttggagacccccaggtgccactcca-cccccagtttttatataaatt 44945064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 44970069 - 44970132
Alignment:
Q  299 tccaggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaatt 362  Q
    ||||||||||||||||||  ||||| || || |||||||||||||||||||||  |||||||||    
T  44970069 tccaggggcggatctcttcagagactcccaggtgccactgcaccccccagtttatatataaatt 44970132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 362
Target Start/End: Original strand, 26942262 - 26942315
Alignment:
Q  309 gatctctttggagacccctagatgccactgcaccccccagttttaatataaatt 362  Q
    |||||||||||||||||| || |||||||||||| ||||||||  |||||||||    
T  26942262 gatctctttggagacccccaggtgccactgcacctcccagtttgcatataaatt 26942315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 49017103 - 49017058
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcacccccc 346  Q
    ||||||||||||||||| |||||||| || ||||||||||||||||    
T  49017103 caggggcggatctctttagagacccccaggtgccactgcacccccc 49017058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 361
Target Start/End: Complemental strand, 21809368 - 21809309
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaat 361  Q
    |||||||||||||||||||||| ||  || ||||||||||| |||||||||| ||||||||    
T  21809368 caggggcggatctctttggagatcctcaggtgccactgcac-ccccagttttgatataaat 21809309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 43080241 - 43080195
Alignment:
Q  305 ggcggatctctttggagacccctagatgccactgcaccccccagttt 351  Q
    |||||||||||||||||||||  || || ||||||||||||||||||    
T  43080241 ggcggatctctttggagaccctcaggtgtcactgcaccccccagttt 43080195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 23086126 - 23086073
Alignment:
Q  308 ggatctctttggagacccctagatgccactgcaccccccagttttaatataaat 361  Q
    ||||||| ||||||| || ||| |||||||||||||||||| |||| |||||||    
T  23086126 ggatctccttggagatccataggtgccactgcaccccccagatttattataaat 23086073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 3418990 - 3419051
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaatt 362  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  3418990 caggggcggatctctttggagacccccagatgccactgcaccccccagtttttatataaatt 3419051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 361
Target Start/End: Complemental strand, 29968777 - 29968718
Alignment:
Q  302 aggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaat 361  Q
    |||||||||||||||| |||||||| || |||||||||||||||||  ||| ||||||||    
T  29968777 aggggcggatctctttagagacccccaggtgccactgcaccccccaacttttatataaat 29968718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 19293003 - 19292957
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcacccccca 347  Q
    ||||||||||||||||  |||||||| || |||||||||||||||||    
T  19293003 caggggcggatctcttcagagacccccaggtgccactgcacccccca 19292957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 4428955 - 4428894
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaatt 362  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  4428955 caggggcggatctctttggagacccctaggtgccactgcaccccccagattttatataaatt 4428894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 302 - 361
Target Start/End: Complemental strand, 14028370 - 14028311
Alignment:
Q  302 aggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaat 361  Q
    ||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||    
T  14028370 aggggcggatctctttggagacccccaggtgcaactgcaccccccagttttaatataaat 14028311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 17549150 - 17549211
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaatt 362  Q
    |||||||||||||||||||||||||| || |||| |||||||||| |||||| |||||||||    
T  17549150 caggggcggatctctttggagacccccaggtgcctctgcacccccaagtttttatataaatt 17549211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 33061828 - 33061880
Alignment:
Q  300 ccaggggcggatctctttggagacccctagatgccactgcaccccccagtttt 352  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||    
T  33061828 ccagggacggatctctgtggagacccctaggtgccactgcaccccccagtttt 33061880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 31736969 - 31736909
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaatt 362  Q
    |||||||| ||||||||||||||||| || ||||||||||| |||||||||| |||||||||    
T  31736969 caggggcgaatctctttggagacccccaggtgccactgcac-ccccagtttttatataaatt 31736909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 37023038 - 37022992
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcacccccca 347  Q
    ||||||||||||||||  |||||||| || |||||||||||||||||    
T  37023038 caggggcggatctcttcagagacccccaggtgccactgcacccccca 37022992  T

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Target: scaffold0097 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 361
Target Start/End: Complemental strand, 47657 - 47597
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaat 361  Q
    |||||||||||||||||||||||| |||| |||||||||||||| ||||||| ||||||||    
T  47657 caggggcggatctctttggagacctctaggtgccactgcacccctcagttttgatataaat 47597  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 346
Target Start/End: Complemental strand, 35187691 - 35187644
Alignment:
Q  299 tccaggggcggatctctttggagacccctagatgccactgcacccccc 346  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||    
T  35187691 tccaggggcggatctctttagagacccccagatgccactgcacccccc 35187644  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 361
Target Start/End: Complemental strand, 8823662 - 8823604
Alignment:
Q  303 ggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaat 361  Q
    ||||||||||||||| |||||||  || |||||||||||||||||||||| ||||||||    
T  8823662 ggggcggatctctttagagaccctcaggtgccactgcaccccccagttttgatataaat 8823604  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 347
Target Start/End: Original strand, 16204739 - 16204786
Alignment:
Q  300 ccaggggcggatctctttggagacccctagatgccactgcacccccca 347  Q
    |||||||||||||||||| |||||||| || |||||||||||||||||    
T  16204739 ccaggggcggatctctttagagacccccaggtgccactgcacccccca 16204786  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 362
Target Start/End: Original strand, 45071008 - 45071064
Alignment:
Q  304 gggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaatt 362  Q
    ||||||||||||||||||||||| || |||||||||||||||| ||||| |||||||||    
T  45071008 gggcggatctctttggagacccc-aggtgccactgcacccccc-gtttttatataaatt 45071064  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 49084085 - 49084037
Alignment:
Q  304 gggcggatctctttggagacccctagatgccactgcaccccccagtttt 352  Q
    ||||||||||||||||||||||| |  ||||||||||||| ||||||||    
T  49084085 gggcggatctctttggagacccccaagtgccactgcaccctccagtttt 49084037  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 361
Target Start/End: Complemental strand, 27993795 - 27993735
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaat 361  Q
    ||||||||||||||||| |||||||| |  || ||||||||||||||  ||| ||||||||    
T  27993795 caggggcggatctctttagagaccccaaagtgtcactgcaccccccaacttttatataaat 27993735  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 361
Target Start/End: Complemental strand, 13284333 - 13284278
Alignment:
Q  306 gcggatctctttggagacccctagatgccactgcaccccccagttttaatataaat 361  Q
    ||||||||||||||||||||| || ||||||||||||| |||||||| ||||||||    
T  13284333 gcggatctctttggagacccccaggtgccactgcacccaccagttttgatataaat 13284278  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 32164998 - 32164937
Alignment:
Q  299 tccaggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaat 361  Q
    |||||||| ||||||||||||||||||| || |||||||| |||||| |||||| ||||||||    
T  32164998 tccaggggtggatctctttggagacccc-aggtgccactgtacccccgagttttgatataaat 32164937  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 43822972 - 43822924
Alignment:
Q  299 tccaggggcggatctctttggagacccctagatgccactgcacccccca 347  Q
    ||||||||||||||||||  |||||||| || |||||||||||||||||    
T  43822972 tccaggggcggatctcttcagagacccccaggtgccactgcacccccca 43822924  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 36577430 - 36577377
Alignment:
Q  203 taagaaacggtgaacaatttaatcgaagactctttgtttcaatattcattcata 256  Q
    ||||| ||||| |||||||||||| |||||||||| |||| |||||| ||||||    
T  36577430 taagacacggtaaacaatttaatccaagactctttatttccatattccttcata 36577377  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 362
Target Start/End: Original strand, 4198205 - 4198262
Alignment:
Q  304 gggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaatt 362  Q
    ||||||||||||||||||||||| || |||||||||||||||||| ||| |||||||||    
T  4198205 gggcggatctctttggagacccc-aggtgccactgcaccccccaggttttatataaatt 4198262  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 36565848 - 36565786
Alignment:
Q  300 ccaggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaatt 362  Q
    ||||||||||||||||||| ||| ||| || |||||||||||||||||| ||| |||||||||    
T  36565848 ccaggggcggatctctttgaagatccccaggtgccactgcaccccccagattttatataaatt 36565786  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 25160709 - 25160665
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcaccccc 345  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||    
T  25160709 caggggcggatctctttagagacccctaggtgccactgcaccccc 25160665  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 3712508 - 3712554
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcacccccca 347  Q
    |||||||||||||| ||||||||||  || |||||||||||||||||    
T  3712508 caggggcggatctccttggagacccacaggtgccactgcacccccca 3712554  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 16632369 - 16632323
Alignment:
Q  300 ccaggggcggatctctttggagacccctagatgccactgcacccccc 346  Q
    |||||||| ||||||||| |||||||| || ||||||||||||||||    
T  16632369 ccaggggcagatctctttagagacccccaggtgccactgcacccccc 16632323  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 345
Target Start/End: Complemental strand, 43671496 - 43671450
Alignment:
Q  299 tccaggggcggatctctttggagacccctagatgccactgcaccccc 345  Q
    |||||| |||||||||||| |||||||| || |||||||||||||||    
T  43671496 tccaggagcggatctctttagagacccccaggtgccactgcaccccc 43671450  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 46671588 - 46671542
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcacccccca 347  Q
    ||||||||||||||||  |||||||| || |||||||||||||||||    
T  46671588 caggggcggatctcttcagagacccccaggtgccactgcacccccca 46671542  T

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Target: scaffold0648 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 347
Target Start/End: Complemental strand, 4651 - 4604
Alignment:
Q  300 ccaggggcggatctctttggagacccctagatgccactgcacccccca 347  Q
    |||||||||||||||||| |||||||| || |||||||||||||||||    
T  4651 ccaggggcggatctctttagagacccccaggtgccactgcacccccca 4604  T

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Target: scaffold0274 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 347
Target Start/End: Complemental strand, 4121 - 4074
Alignment:
Q  300 ccaggggcggatctctttggagacccctagatgccactgcacccccca 347  Q
    |||||||||||||||||| |||||||| || |||||||||||||||||    
T  4121 ccaggggcggatctctttagagacccccaggtgccactgcacccccca 4074  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 7011315 - 7011375
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcaccccccagttttaatataaatt 362  Q
    |||||||||||||||||||||||||| || ||||||| ||  ||| |||||| |||||||||    
T  7011315 caggggcggatctctttggagaccccaagttgccactaca-tccctagtttttatataaatt 7011375  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 230291 - 230335
Alignment:
Q  301 caggggcggatctctttggagacccctagatgccactgcaccccc 345  Q
    ||||||||||||||||| |||||||| || || ||||||||||||    
T  230291 caggggcggatctctttagagacccccaggtgtcactgcaccccc 230335  T

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