View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14838_low_3 (Length: 363)

Name: NF14838_low_3
Description: NF14838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14838_low_3
NF14838_low_3
[»] chr7 (5 HSPs)
chr7 (19-333)||(33730727-33731041)
chr7 (128-164)||(6741508-6741544)
chr7 (124-177)||(34609262-34609315)
chr7 (124-166)||(1029697-1029739)
chr7 (124-165)||(8660124-8660165)
[»] chr8 (6 HSPs)
chr8 (110-172)||(38565543-38565606)
chr8 (124-177)||(7848638-7848691)
chr8 (112-162)||(1679064-1679114)
chr8 (108-167)||(35978041-35978101)
chr8 (124-177)||(13036844-13036898)
chr8 (124-166)||(30018656-30018698)
[»] chr5 (2 HSPs)
chr5 (124-187)||(4501630-4501693)
chr5 (115-183)||(34383253-34383321)
[»] chr6 (5 HSPs)
chr6 (127-165)||(33505680-33505718)
chr6 (124-171)||(10753066-10753113)
chr6 (124-186)||(306652-306713)
chr6 (114-171)||(10749126-10749184)
chr6 (113-177)||(13850291-13850356)
[»] chr1 (3 HSPs)
chr1 (110-165)||(30072302-30072358)
chr1 (124-166)||(46553285-46553327)
chr1 (124-177)||(10666647-10666700)
[»] scaffold0199 (1 HSPs)
scaffold0199 (112-162)||(4301-4351)
[»] chr4 (7 HSPs)
chr4 (124-166)||(50833766-50833808)
chr4 (130-192)||(56523034-56523094)
chr4 (125-158)||(30337853-30337886)
chr4 (112-156)||(8699504-8699548)
chr4 (115-163)||(17554898-17554946)
chr4 (124-164)||(31627913-31627953)
chr4 (123-167)||(37813204-37813248)
[»] chr2 (4 HSPs)
chr2 (108-172)||(35989092-35989157)
chr2 (125-177)||(15379931-15379983)
chr2 (130-172)||(7618724-7618766)
chr2 (129-170)||(16009148-16009189)


Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 33730727 - 33731041
Alignment:
Q  19 agttcttttttgcacacccctatcagtacgggtgctttactgttttacatgtacacaagcctcagagacaaacacagaccagcttttgctcttttaaaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33730727 agttcttttttgcacacccctatcagtacgggtgctttactgttttacatgtacacaagcctcagagacaaacacagaccagcttttgctcttttaaaaa 33730826  T
Q  119 tctataaaattaatctctaaattattgagtatcaaaatcacttttttaataatctgtaataaatgggtctttaattatgctcagtttgtttggttgatga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |    
T  33730827 tctataaaattaatctctaaattattgagtatcaaaatcacttttttaataatttgtaataaatgggtctttaattatgctcattttgtttggttgataa 33730926  T
Q  219 tcacaaatgattattgtttctcctggtcaaagttatttctctgtttattgctaggcccttgaaaatttgcatcttgatgttgctttgtattacacacgca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33730927 tcacaaatgattattgtttctcctggtcaaagttatttctctgtttattgctaggcccttgaaaatttgcatcttgatgttgctttgtattacacacaca 33731026  T
Q  319 accacatgtttgtgt 333  Q
    | |||||||||||||    
T  33731027 aacacatgtttgtgt 33731041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 6741508 - 6741544
Alignment:
Q  128 ttaatctctaaattattgagtatcaaaatcacttttt 164  Q
    |||||||||||||||||||||||||||||||||||||    
T  6741508 ttaatctctaaattattgagtatcaaaatcacttttt 6741544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 34609315 - 34609262
Alignment:
Q  124 aaaattaatctctaaattattgagtatcaaaatcacttttttaataatctgtaa 177  Q
    ||||||||| ||||||||||||||||||||||||| |||||  | |||||||||    
T  34609315 aaaattaatatctaaattattgagtatcaaaatcattttttgtaaaatctgtaa 34609262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 1029739 - 1029697
Alignment:
Q  124 aaaattaatctctaaattattgagtatcaaaatcactttttta 166  Q
    |||| |||||||||||||||||| ||||||||||| |||||||    
T  1029739 aaaaataatctctaaattattgaatatcaaaatcattttttta 1029697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 8660124 - 8660165
Alignment:
Q  124 aaaattaatctctaaattattgagtatcaaaatcactttttt 165  Q
    ||||||||||||||||||||| | ||||||||||| ||||||    
T  8660124 aaaattaatctctaaattattaaatatcaaaatcaatttttt 8660165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 38565606 - 38565543
Alignment:
Q  110 ttttaaaaatctataaaa-ttaatctctaaattattgagtatcaaaatcacttttttaataatc 172  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  38565606 ttttaaaaatctctaaaaattaatctctaaattattgagtatcaaaatcacttttttcataatc 38565543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 7848691 - 7848638
Alignment:
Q  124 aaaattaatctctaaattattgagtatcaaaatcacttttttaataatctgtaa 177  Q
    |||||||||||||||||||||||| |||||||||| |||||| |||||| ||||    
T  7848691 aaaattaatctctaaattattgagaatcaaaatcaatttttttataatcagtaa 7848638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 1679114 - 1679064
Alignment:
Q  112 ttaaaaatctataaaattaatctctaaattattgagtatcaaaatcacttt 162  Q
    |||||||| | ||||| |||||||||||||||||| |||||||||||||||    
T  1679114 ttaaaaatatctaaaaataatctctaaattattgactatcaaaatcacttt 1679064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 35978101 - 35978041
Alignment:
Q  108 tcttttaaaaatctataaaattaat-ctctaaattattgagtatcaaaatcacttttttaa 167  Q
    |||||||||||||| ||||||| || || |||| |||||| ||||||||||||||||||||    
T  35978101 tcttttaaaaatctctaaaatttattctttaaactattgaatatcaaaatcacttttttaa 35978041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 13036844 - 13036898
Alignment:
Q  124 aaaattaatctctaaattattgagtatcaaaatca-cttttttaataatctgtaa 177  Q
    |||||||||||||||||||||||| |||||||| |  ||||||||||||| ||||    
T  13036844 aaaattaatctctaaattattgagcatcaaaataagtttttttaataatccgtaa 13036898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 30018698 - 30018656
Alignment:
Q  124 aaaattaatctctaaattattgagtatcaaaatcactttttta 166  Q
    |||||||||| |||||||| ||| |||||||||||||||||||    
T  30018698 aaaattaatcgctaaattaatgaatatcaaaatcactttttta 30018656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 4501693 - 4501630
Alignment:
Q  124 aaaattaatctctaaattattgagtatcaaaatcacttttttaataatctgtaataaatgggtc 187  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||| |||| ||| |||||    
T  4501693 aaaattaatctttaaattattgagtatcaaaatcactttttttaaaatccgtaacaaaggggtc 4501630  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 34383321 - 34383253
Alignment:
Q  115 aaaatctataaaattaatctctaaattattgagtatcaaaatcacttttttaataatctgtaataaatg 183  Q
    ||||||| ||||| ||||||||||||||||   | |||||||||||||| |  |||||||||| |||||    
T  34383321 aaaatctctaaaaataatctctaaattattttatgtcaaaatcacttttattttaatctgtaacaaatg 34383253  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 33505718 - 33505680
Alignment:
Q  127 attaatctctaaattattgagtatcaaaatcactttttt 165  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33505718 attaatctctaaattattgagtatcaaaatcactttttt 33505680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 10753113 - 10753066
Alignment:
Q  124 aaaattaatctctaaattattgagtatcaaaatcacttttttaataat 171  Q
    ||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  10753113 aaaattaatctctaaattattgagtattaaaatcacctttttgataat 10753066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 306652 - 306713
Alignment:
Q  124 aaaattaatctctaaattattgagtatcaaaatcacttttttaataatctgtaataaatgggt 186  Q
    |||||| |||||||| ||||||||||||||||||| |||||| |||||| |||| ||||||||    
T  306652 aaaattgatctctaagttattgagtatcaaaatcaatttttt-ataatccgtaacaaatgggt 306713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 10749184 - 10749126
Alignment:
Q  114 aaaaatctataaaa-ttaatctctaaattattgagtatcaaaatcacttttttaataat 171  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||||| ||||| |||||    
T  10749184 aaaaatctataaaaattaatttctagattattgagtatcaaaatcacattttttataat 10749126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 13850356 - 13850291
Alignment:
Q  113 taaaaatctataaaat-taatctctaaattattgagtatcaaaatcacttttttaataatctgtaa 177  Q
    ||||||||| |||||| |||||||| ||||||||| |||||||||||| || || |||||| ||||    
T  13850356 taaaaatctctaaaatgtaatctcttaattattgattatcaaaatcacattatttataatccgtaa 13850291  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 30072302 - 30072358
Alignment:
Q  110 ttttaaaaatctataaaa-ttaatctctaaattattgagtatcaaaatcactttttt 165  Q
    |||||||||||| ||||| |||||||||||| |||||||||| ||||||||||||||    
T  30072302 ttttaaaaatctctaaaaattaatctctaaaatattgagtattaaaatcactttttt 30072358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 46553327 - 46553285
Alignment:
Q  124 aaaattaatctctaaattattgagtatcaaaatcactttttta 166  Q
    |||| |||||||||||||||||| ||||||||||| |||||||    
T  46553327 aaaaataatctctaaattattgaatatcaaaatcattttttta 46553285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 10666647 - 10666700
Alignment:
Q  124 aaaattaatctctaaattattgagtatcaaaatcacttttttaataatctgtaa 177  Q
    ||||||| |||||||| |||||| || |||||||| |||||| |||||||||||    
T  10666647 aaaattattctctaaactattgaataccaaaatcattttttttataatctgtaa 10666700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 4351 - 4301
Alignment:
Q  112 ttaaaaatctataaaattaatctctaaattattgagtatcaaaatcacttt 162  Q
    |||||||| | ||||| |||||||||||||||||| |||||||||||||||    
T  4351 ttaaaaatatctaaaaataatctctaaattattgactatcaaaatcacttt 4301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 50833808 - 50833766
Alignment:
Q  124 aaaattaatctctaaattattgagtatcaaaatcactttttta 166  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  50833808 aaaatcaatctctaaattattgaatatcaaaatcactttttta 50833766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 56523094 - 56523034
Alignment:
Q  130 aatctctaaattattgagtatcaaaatcacttttttaataatctgtaataaatgggtctttaa 192  Q
    |||||||||||||||||  ||||||||||||||||  ||||||||||| ||||| | ||||||    
T  56523094 aatctctaaattattga--atcaaaatcactttttctataatctgtaacaaatgagcctttaa 56523034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 30337853 - 30337886
Alignment:
Q  125 aaattaatctctaaattattgagtatcaaaatca 158  Q
    |||||||||||||||||||||| |||||||||||    
T  30337853 aaattaatctctaaattattgaatatcaaaatca 30337886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 8699504 - 8699548
Alignment:
Q  112 ttaaaaatctataaaattaatctctaaattattgagtatcaaaat 156  Q
    |||||||||| ||||| |||||| |||||||||||||| ||||||    
T  8699504 ttaaaaatctctaaaaataatctttaaattattgagtaccaaaat 8699548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 17554898 - 17554946
Alignment:
Q  115 aaaatctataaaattaatctctaaattattgagtatcaaaatcactttt 163  Q
    ||||||| ||||| |||||| ||||||||| | ||||||||||||||||    
T  17554898 aaaatctttaaaaataatctttaaattattcaatatcaaaatcactttt 17554946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 31627913 - 31627953
Alignment:
Q  124 aaaattaatctctaaattattgagtatcaaaatcacttttt 164  Q
    ||||||||| |||||| || |||||||||||||||||||||    
T  31627913 aaaattaatttctaaactactgagtatcaaaatcacttttt 31627953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 37813204 - 37813248
Alignment:
Q  123 taaaattaatctctaaattattgagtatcaaaatcacttttttaa 167  Q
    ||||| |||||||||||||||||| | ||||||||| ||||||||    
T  37813204 taaaaataatctctaaattattgaatgtcaaaatcatttttttaa 37813248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 35989157 - 35989092
Alignment:
Q  108 tcttttaaaaatctataaaat-taatctctaaattattgagtatcaaaatcacttttttaataatc 172  Q
    |||||||||||||| |||||  ||||||| |||||||||| ||| |||||||||||||| ||||||    
T  35989157 tcttttaaaaatctctaaaaactaatctccaaattattgaatattaaaatcactttttttataatc 35989092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 15379931 - 15379983
Alignment:
Q  125 aaattaatctctaaattattgagtatcaaaatcacttttttaataatctgtaa 177  Q
    ||||||||||||||| |||||| ||||||| |||||| ||| |||||||||||    
T  15379931 aaattaatctctaaagtattgaatatcaaagtcacttattttataatctgtaa 15379983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 7618724 - 7618766
Alignment:
Q  130 aatctctaaattattgagtatcaaaatcacttttttaataatc 172  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||    
T  7618724 aatctctaaattattgaatatcaaaatcaatttttttataatc 7618766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 16009148 - 16009189
Alignment:
Q  129 taatctctaaattattgagtatcaaaatcacttttttaataa 170  Q
    |||||||| ||||||||| |||||||||||||||||| ||||    
T  16009148 taatctcttaattattgaatatcaaaatcacttttttcataa 16009189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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