View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14838_low_4 (Length: 347)
Name: NF14838_low_4
Description: NF14838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14838_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 28663931 - 28663700
Alignment:
| Q |
11 |
tgcatata-aacagcatttggatctggatttggtgttgggcatctaagttttaagtaggcaacatatgtggggtctagctttgggtccactgtggggtat |
109 |
Q |
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| T |
28663931 |
tgcatatagaacagcatttggatctggatttggtgttgggcatctaagttttagataggcagcatatgtggggtctagctttgggtccaccgtggggtat |
28663832 |
T |
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| Q |
110 |
agtctgtggaccaaattcatgcaatgtactcttcccactgagtgtcctcctgattgaatcaaagtgaccaattaattatgtttatgtttgacttttgaag |
209 |
Q |
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| T |
28663831 |
agtctatggaccatattcatgcaatgtactcttcccactgagtgtcctcctgattgaatcaaagtgaccaattaattatgtttatgtttgacttttgaag |
28663732 |
T |
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| Q |
210 |
taaatgttatataatgtatatgaagcacggacac |
243 |
Q |
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| T |
28663731 |
taaatgt--tataatgtatatgaagcacagacac |
28663700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 28636351 - 28636186
Alignment:
| Q |
20 |
acagcatttggatctggatttggtgttgggcatctaagttttaagtaggcaacatatgtggggtctagctttgggtccactgtggggtatagtctgtgga |
119 |
Q |
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| T |
28636351 |
acagcttttggatctggatttggtgttgggcacctacgttttaggtaggtagcatgtgtaggatctaacgttggatccactgtggggtatagtctgtgga |
28636252 |
T |
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| Q |
120 |
ccaaattcatgcaatgtactcttcccactgagtgtcctcctgattgaatcaaagtgaccaattaat |
185 |
Q |
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| T |
28636251 |
ccaaattcatgcaatgtactcttccaactgagtgtgctcctgatttaatcaaagtgaccagttaat |
28636186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 28606566 - 28606406
Alignment:
| Q |
20 |
acagcatttggatctggatttggtgttgggcatctaagttttaagtaggcaacatatgtggggtctagctttgggtccactgtggggtatagtctgtgga |
119 |
Q |
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| T |
28606566 |
acagcttttggatctggatttggtgttgggcacctacgttttaggtaggcagcatgtgtaggatctaacgttggatccactgtggggtatagtctgtgga |
28606467 |
T |
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| Q |
120 |
ccaaattcatgcaatgtactcttcccactgagtgtcctcctgattgaatcaaagtgaccaa |
180 |
Q |
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| T |
28606466 |
ccaaattcatgcaatgtactcttccaaccgagtgtgctcctaattgaatcaaagtgaccaa |
28606406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 28656827 - 28656682
Alignment:
| Q |
38 |
tttggtgttgggcatctaagttttaagtaggcaacatatgtggggtctagctttgggtccactgtggggtatagtctgtggaccaaattcatgcaatgta |
137 |
Q |
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| T |
28656827 |
tttggttttggacatctacgttttaggtagacaacatatgtagggtctagcgttgggtccactatagggtatagtctgtggaccatatttatgcagtgta |
28656728 |
T |
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| Q |
138 |
ctcttcccactgagtgtcctcctgattgaatcaaagtgaccaatta |
183 |
Q |
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| T |
28656727 |
ctcttcccactgaatgtgctcctgattcaatcatagtgaccaatta |
28656682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 26830645 - 26830606
Alignment:
| Q |
239 |
gacacgacacttgtaatcacatttaattatgtgatttttt |
278 |
Q |
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| T |
26830645 |
gacacgacacttataattacatttaattatgtgatttttt |
26830606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 278
Target Start/End: Original strand, 426520 - 426555
Alignment:
| Q |
243 |
cgacacttgtaatcacatttaattatgtgatttttt |
278 |
Q |
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| T |
426520 |
cgacacttgtaattacatttaattatgtgatttttt |
426555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 4118341 - 4118374
Alignment:
| Q |
245 |
acacttgtaatcacatttaattatgtgatttttt |
278 |
Q |
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| T |
4118341 |
acacttgtaattacatttaattatgtgatttttt |
4118374 |
T |
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