View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14838_low_7 (Length: 286)
Name: NF14838_low_7
Description: NF14838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14838_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 50968333 - 50968053
Alignment:
| Q |
4 |
atgtcgaacaatataaaaataactaaaatttactccttaaaatcatcaattgttgtatttgagttaaatttttcagcgatatcatcttctaaatcatgta |
103 |
Q |
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| T |
50968333 |
atgtcaaaaaatataaaaataactaaaatttactccttaaaatcatcaattgttgtatttgagttaaatttttcagcgatatcatcttctaaataatgta |
50968234 |
T |
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| Q |
104 |
atctataagaaaatcatcttcaatcttcttcggtagccttgtttttatagattcttataaattaatcccatgcttgtttttctctctaataaaaagttaa |
203 |
Q |
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| T |
50968233 |
atctataagaaaatcatcttcaatcttcttcggtagccttgtttttatagattcttataaattaatcccatgcttgtttttctctctaataaaaagttaa |
50968134 |
T |
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| Q |
204 |
cattctaattctgttatggtttccatgataaatatttttctttaagtcaactcacttaatatgtttacagttttctctgta |
284 |
Q |
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| T |
50968133 |
cattctaattctgttatggtttccatgataaatatttttctttaagtcaactcacttaatatgtttacagttttctgtgta |
50968053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 50970275 - 50970193
Alignment:
| Q |
90 |
ttctaaatcatgtaatctataagaaaatcatcttcaatcttcttcggtagccttgtttttatagattcttataaattaatccc |
172 |
Q |
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| T |
50970275 |
ttctaaatcatgtaatctatgagaaaatcatcttcaatctgcttatgtagccttgtttttatagattctaataaatcaatccc |
50970193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 27932813 - 27932911
Alignment:
| Q |
186 |
tctctaataaaaagttaacattctaattctgttatggtttccatgataaatatttttctttaagtcaactcacttaatatgtttacagttttctctgta |
284 |
Q |
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|||| |||||||| |||||||| |||||||||||||||||||||||||| | ||||||| |||| ||||| ||||||||| |||||||||| ||||||| |
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| T |
27932813 |
tctccaataaaaaattaacattttaattctgttatggtttccatgataactgtttttctctaagccaactaacttaatatatttacagtttcctctgta |
27932911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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