View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14839_low_2 (Length: 251)
Name: NF14839_low_2
Description: NF14839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14839_low_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 41280468 - 41280701
Alignment:
| Q |
20 |
tagaggaataatacaaacattaatataatataaacaatttcatagcatggacatatgagcatnnnnnnn--gtgtaattaatgtctctaaacatagcaag |
117 |
Q |
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| T |
41280468 |
tagaggaataatacaaacattaatataatataaacaatttcatagcatggacatatgagcataaaaaaaaagtgtaattaatgtctctaaacatagcaag |
41280567 |
T |
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| Q |
118 |
aaagaaaatgataaaattacctggtagcaagcaaaacgagggtaaggaagaagcaatgcaagcacacaagcaattacacctaaagcagtactagcagcca |
217 |
Q |
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| T |
41280568 |
aaagaaaatgataaaattacctggtagcaagcaaaacgagggtaaggaagaagcaatgcaagcacacaagcaattacacctaaagcagtactagcagcca |
41280667 |
T |
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| Q |
218 |
aatgaataggatgcataataggatcaatatgagc |
251 |
Q |
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| T |
41280668 |
aatgaataggatgcataataggatcaatatgagc |
41280701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 38806483 - 38806444
Alignment:
| Q |
186 |
agcaattacacctaaagcagtactagcagccaaatgaata |
225 |
Q |
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| T |
38806483 |
agcaattacacataaagcagtactagctgccaaatgaata |
38806444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 34981782 - 34981887
Alignment:
| Q |
92 |
taattaatgtctctaaacatagcaagaaagaaaatgataaaattacctggtagcaagcaaaacgagggtaaggaagaagcaatgcaagcacacaagcaat |
191 |
Q |
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| T |
34981782 |
taattaatgtctcgaaacatagcatgaaagaaaatgataaaattacctggtagcaagcaaaaggagggcaaggaaga---aatgcaaccacacaagcaat |
34981878 |
T |
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| Q |
192 |
tacacctaa |
200 |
Q |
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| T |
34981879 |
tacacctaa |
34981887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 34981660 - 34981612
Alignment:
| Q |
182 |
cacaagcaattacacctaaagcagtactagcagccaaatgaataggatg |
230 |
Q |
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| T |
34981660 |
cacaagcaattacacataaaggagtactagctgccaaatgaataagatg |
34981612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 54185258 - 54185219
Alignment:
| Q |
186 |
agcaattacacctaaagcagtactagcagccaaatgaata |
225 |
Q |
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| T |
54185258 |
agcaattacacataaagcagtactagctgccaaatgaata |
54185219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 46636708 - 46636669
Alignment:
| Q |
186 |
agcaattacacctaaagcagtactagcagccaaatgaata |
225 |
Q |
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| T |
46636708 |
agcaattacacataaagcagtactagctgccaaatgaata |
46636669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 43514794 - 43514833
Alignment:
| Q |
186 |
agcaattacacctaaagcagtactagcagccaaatgaata |
225 |
Q |
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| T |
43514794 |
agcaattacacataaagcagtactagctgccaaatgaata |
43514833 |
T |
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