View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1483_high_1 (Length: 482)
Name: NF1483_high_1
Description: NF1483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1483_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Original strand, 37641178 - 37641626
Alignment:
| Q |
18 |
caaacaaagcattgatttcagtatcattgattgggttatatgaggatgtgtctgaagatgagctagtgcttaaggtgattgaagaactttcgggttggtt |
117 |
Q |
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| T |
37641178 |
caaacaaagcattgatttcagtatcattgattgggttatttgaggatgtgtctgaagatgagctagtgcttaaggtgattcaagaactttcgggttggtt |
37641277 |
T |
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| Q |
118 |
tggggataaaatggtaaaagaatggaagcatttgaggacttataggattgagtatgcacaacctaatcagtgtccacctacgaatttgaagaaaaaccca |
217 |
Q |
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| T |
37641278 |
tggggataaaatggtaaaagaatggaagcatttgaggacttataggattgagtatgcacaacctaatcagtgtccacctacgaatttgaagaaaaaccca |
37641377 |
T |
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| Q |
218 |
acaattgaaccgggtttgtatttgtgcggtgattatttgacttcagctacatttgacggtgctttggtttctggtaggagagcagctgaatcactgttaa |
317 |
Q |
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| T |
37641378 |
acaattgaacagggtttgtatttgtgcggtgattatttgacttcagctacatttgacggtgctttggtttctggtaggagagcagctgaatcactgttaa |
37641477 |
T |
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| Q |
318 |
atgatagagccttctttggctaattgcttcattcatattcttactttacattgtatgtacatgtaacatttttgtaataaatatgaaaaatactactata |
417 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37641478 |
atgatagagccttctttggctaattgcttcattaatattcttactttacattgtatgtacatgtaacatttttgtaataaatatgaaaaatactactata |
37641577 |
T |
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| Q |
418 |
taaagcttacagcttaaggaaggtaattttgtttagaaatcaagttcat |
466 |
Q |
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| T |
37641578 |
taaagcttacagctgaaggaaggtaattttgtttagaaatcaagttcat |
37641626 |
T |
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