View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1483_high_4 (Length: 250)
Name: NF1483_high_4
Description: NF1483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1483_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 8214704 - 8214831
Alignment:
| Q |
24 |
tcaaacattatatctttttattttattttatcctctatgctaagaatgtgatcatatcttaaagtttttggtcatattttttaattggtagaaatttaat |
123 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8214704 |
tcaaacattatatcttt--attttattttatcctctatactaagaatgtgatcatatctcaaagtttttggtcatattttttaattggtagaaatttaac |
8214801 |
T |
|
| Q |
124 |
atggtcaaagcttaaattttttgttacatc |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
8214802 |
atggtcaaagcttaaattttttgttacatc |
8214831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 8236923 - 8237018
Alignment:
| Q |
51 |
ttatcctctatgctaagaatgtgatcatatcttaaagtttttggtcatattttttaattggta-gaaatttaatatggtcaaagcttaaatttttt |
145 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||| |
|
|
| T |
8236923 |
ttatcctctatgctatgaatgtgatcatatcttaaattttttggtcatatcttttaattggtaggaattttaatatggtcaaagcttacatttttt |
8237018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 45 - 153
Target Start/End: Original strand, 8226176 - 8226284
Alignment:
| Q |
45 |
tttattttatcctctatgctaagaatgtgatcatatcttaaagtttttggtcatattttttaattggtagaaa-tttaatatggtcaaagcttaaatttt |
143 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| | ||||| ||| ||||||||||||||||| |||| ||| |
|
|
| T |
8226176 |
tttattttatcctctatactaagaatgtgatcatatcttaaattttttggtcatatctttt-agtggtataaattttaatatggtcaaagcataaacttt |
8226274 |
T |
|
| Q |
144 |
ttgttacatc |
153 |
Q |
| |
|
||| |||||| |
|
|
| T |
8226275 |
ttggtacatc |
8226284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 8233619 - 8233716
Alignment:
| Q |
45 |
tttattttatcctctatgctaagaatgtgatcatatcttaaagtttttggtcatattttttaattggtagaaa-tttaatatggtcaaagcttaaattt |
142 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||| ||| ||||||||| |||||| |||||| |||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
8233619 |
tttattttatcttctatgctatgtatgtgatcaaatcataaagttttaggtcat-gtttttagttggtagaaattttaatatggttaaagctgaaattt |
8233716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 8212872 - 8212966
Alignment:
| Q |
45 |
tttattttatcctctatgctaagaatgtgatcatatcttaaagtttttggtcatattttttaattggtagaaa-tttaatatggtcaaagcttaaat |
140 |
Q |
| |
|
||||||||||||||||||||| | |||||| || ||| ||||||||| |||||| | |||| |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
8212872 |
tttattttatcctctatgctatgcatgtga-caaatcataaagttttaggtcat-gtctttagttggtagaaattttaatatggttaaagcttaaat |
8212966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University