View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1483_low_1 (Length: 644)
Name: NF1483_low_1
Description: NF1483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1483_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 8 - 627
Target Start/End: Complemental strand, 36540662 - 36540043
Alignment:
| Q |
8 |
gtgagatgaaatgaaatttaaatggttatctttacctttgtattccaaacattgaaatctgacgaaaagcaaattcaagaggaaaatgtaatcaactatc |
107 |
Q |
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| T |
36540662 |
gtgaaatgaaatgaaatttaaatggttatctttacctttgtattccaaacattgaaatctaacgaaaagcaaattcaagaggaaaatgtaatcaaccatc |
36540563 |
T |
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| Q |
108 |
tatatataattaannnnnnnaaaacaatctatatataataattaattaaatagcaacatgaaatagaatagcacaaatacatgttaatttgtatctttct |
207 |
Q |
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| T |
36540562 |
tatatataattaatttttttaaaacaatctatatataataattaattaaatagcaacatgaaatagaatagcacaaatacatgttaatttgtatctttct |
36540463 |
T |
|
| Q |
208 |
aattatttatacatggtgtgcatcatcatcttgctagctgcttgtttttctggtattttgtttgttgttaaggaaatcaagcaagacagtactcttacac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36540462 |
gattatttatacatggtgtgcatcatcatcttgctagctgcttgtttttctggtattttgtttgttgttaaggaaatcaagcaagacagtactcttacac |
36540363 |
T |
|
| Q |
308 |
ttaggacattttggattgggatcagcctcggataacaaaacatacatgtgacattgaagacaacctaggagaaccatagcacttgtctcttcctcagcct |
407 |
Q |
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| T |
36540362 |
ttagggcattttggattgggatcagcctcggataacaaaacatacatgtgacattgaagacaacctaggagaaccatagcacttgtctcttcttcagcct |
36540263 |
T |
|
| Q |
408 |
cagaagacacacatgataagtctgtactacaaactgatgaagtagtcgaaaactcggaagacatagctgacgatgatgagtttatagaccgtcggttgaa |
507 |
Q |
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| T |
36540262 |
cagaagacacacatgataagtccgtactacaaactgatgaagtagtcgaaaactcggaagacatagctgacgatgatgagtttatagaccgtcggttgaa |
36540163 |
T |
|
| Q |
508 |
gtgtatcggcggttctgattctaagatatgcctaagaactttctaaaatggttgcaatgaaaggaagtaaaatatctaggattatgattatgttagtggt |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36540162 |
gtgtatcggcggttctgattctaagatatgcctaagaactttctaaaatggttgcaatgaaaggaagtaaaatatctaggattatgattatgttagtggt |
36540063 |
T |
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| Q |
608 |
ttatgttatgtggagcaaat |
627 |
Q |
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|||||||||||||||||||| |
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| T |
36540062 |
ttatgttatgtggagcaaat |
36540043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 18904069 - 18904119
Alignment:
| Q |
273 |
tgttaaggaaatcaagcaagacagtactcttacacttaggacattttggat |
323 |
Q |
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| T |
18904069 |
tgttaagaaaatcaagcaacacagtactcttgcacttgggacatttgggat |
18904119 |
T |
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