View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1483_low_10 (Length: 240)

Name: NF1483_low_10
Description: NF1483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1483_low_10
NF1483_low_10
[»] chr8 (2 HSPs)
chr8 (1-77)||(41702763-41702839)
chr8 (148-224)||(41702608-41702684)
[»] chr5 (1 HSPs)
chr5 (9-77)||(2425641-2425709)


Alignment Details
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 41702839 - 41702763
Alignment:
Q  1 atactctgcaaatgagtgaatgatgcgggagacaaattgagtcttaagcttcctgtatttggactgaagggagctcc 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702839 atactctgcaaatgagtgaatgatgcgggagacaaattgagtcttaagcttcctgtatttggactgaagggagctcc 41702763  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 41702684 - 41702608
Alignment:
Q  148 atatttgcatacacatgagatttatctaaactaaaagcacctgcacgttcttaccctttaaggaaatataattaatt 224  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41702684 atatttgcatacacatgagatttatctaaactaaaagcacccgcacgttcttaccctttaaggaaatataattaatt 41702608  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 2425641 - 2425709
Alignment:
Q  9 caaatgagtgaatgatgcgggagacaaattgagtcttaagcttcctgtatttggactgaagggagctcc 77  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||| || |||||||||||||||||||    
T  2425641 caaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaagggagctcc 2425709  T

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