View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1483_low_12 (Length: 230)
Name: NF1483_low_12
Description: NF1483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1483_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 451187 - 451007
Alignment:
| Q |
10 |
aataaaggatgagttatcataacctaatttaagtaagcaagaaataaatacaggacagattaactcatagataagttactcataaatgcatttttgtcac |
109 |
Q |
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| T |
451187 |
aataaaggatgagttatcataacctaatttaagtaagcaagaaataaatacaggacagattaactcatagataagttactcataaatgcatttttgtcac |
451088 |
T |
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| Q |
110 |
aatttccgttacgataaagcaaacaagaaaatagataatcaaactcatcaagaatgttagatctagtttagaaagttcata |
190 |
Q |
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| T |
451087 |
aatttcctttacaataaagcaaacaagaaactagataatcgaactcatcaagaatgttagatctagtttagaaagttcata |
451007 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 9335304 - 9335345
Alignment:
| Q |
142 |
agataatcaaactcatcaagaatgttagatctagtttagaaa |
183 |
Q |
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| T |
9335304 |
agataatcaaactcatcaacaatgttacatctagtttagaaa |
9335345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 9340111 - 9340159
Alignment:
| Q |
142 |
agataatcaaactcatcaagaatgttagatctagtttagaaagttcata |
190 |
Q |
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| T |
9340111 |
agataatcaaacccaacaacattgttacatctagtttagaaagttcata |
9340159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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