View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1483_low_16 (Length: 201)
Name: NF1483_low_16
Description: NF1483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1483_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 5e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 35264470 - 35264639
Alignment:
| Q |
14 |
atgaacatgtgtagagacaacaagtcttcaaataagaactgcatctttagttgtaaagcaacaaacaaattggtcagatatttnnnnnnnttggtaaaat |
113 |
Q |
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| T |
35264470 |
atgaacatgtgtagagacaacaagtcttcaaataagaactgcatctttagttgtaaagtaacaaacaaattggtcagatatttaaaaaaattggtaaaat |
35264569 |
T |
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| Q |
114 |
gatgcattcaaaaagaaataggttcggttgccgcagcaaataggatgnnnnnnnggaagtctgcagagga |
183 |
Q |
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| T |
35264570 |
gatgcattcaaaaagaaataggttcggttgccgcagcaaataggatgaaaaaaaggaagtctgcagagga |
35264639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 35271802 - 35271945
Alignment:
| Q |
16 |
gaacatgtgtagagacaacaagtcttcaaataagaactgcatctttagttgtaaagcaacaaacaaattggtcagatatttnnnnnnnttggtaaaatga |
115 |
Q |
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| T |
35271802 |
gaacatgtgtagaaataacaagtcttaaaataagaactatagctttagttgtaaagtaacaaacaaattggtctaatatttaaaaaatttggtaaaatga |
35271901 |
T |
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| Q |
116 |
tgcattcaaaaagaaataggttcggttgccgcagcaaataggat |
159 |
Q |
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| T |
35271902 |
tgcattcaaaaatatataggttccgttgccaaagcaattaggat |
35271945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 35148463 - 35148504
Alignment:
| Q |
43 |
aaataagaactgcatctttagttgtaaagcaacaaacaaatt |
84 |
Q |
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| T |
35148463 |
aaataggaactgcgtctttagttgtaaggcaacaaacaaatt |
35148504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 36778252 - 36778397
Alignment:
| Q |
14 |
atgaacatgtgtagagacaacaagtcttcaaataagaactgcatctttagttgtaaagcaacaaacaaattggtcagatatttnnnnnnnttggtaaaat |
113 |
Q |
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|||||||| |||||| | |||||||||| |||||||||| || |||||||||||||| |||||||||||||||| ||||||| |||||||||| |
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| T |
36778252 |
atgaacatatgtagaaataacaagtcttaaaataagaaccacagctttagttgtaaagtaacaaacaaattggtctgatatttaaaaaatttggtaaaat |
36778351 |
T |
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| Q |
114 |
gatgcattcaaaaagaaataggttcggttgccgcagcaaataggat |
159 |
Q |
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| T |
36778352 |
gatgcattcaaaaataaataggtacggttaccacagcaattaggat |
36778397 |
T |
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