View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1483_low_3 (Length: 400)
Name: NF1483_low_3
Description: NF1483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1483_low_3 |
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| [»] scaffold0055 (1 HSPs) |
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| [»] scaffold0052 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 84 - 360
Target Start/End: Complemental strand, 14989597 - 14989321
Alignment:
| Q |
84 |
acccaaatccattggtatggaacattttattttccaaataaaaacccgagtgcgagccagactgaaaaattactttctttgttgcggaataagaagcctt |
183 |
Q |
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| T |
14989597 |
acccaaatccattagtatggaacattttattttccaagtaaaaacccgagtgcgagccagactgaaaaattactttctttattgcggaataagaagcctt |
14989498 |
T |
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| Q |
184 |
cacattaatatgttgatgatctaaatatgaaatgtagagtcgcctttcgaattccgagcactagagatatttcttgaatcaatttgtagcttccttgatg |
283 |
Q |
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| T |
14989497 |
cacattaatatgttgatgatctaaatatgaaatgtagagtcgcctttcgaattccgagcactagagatattgcttgaatcaatttgtagcttccttgatg |
14989398 |
T |
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| Q |
284 |
cacgagcttcagatctggagatggatacttatcctacacttgatgaacttacaaacaaggtataaattacttgtttt |
360 |
Q |
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| T |
14989397 |
cacgagcttcagatctggagatggatacttatcctacacttgatgaacttacaaacaaggtatagattacttgtttt |
14989321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 200 - 346
Target Start/End: Complemental strand, 14982909 - 14982763
Alignment:
| Q |
200 |
tgatctaaatatgaaatgtagagtcgcctttcgaattccgagcactagagatatttcttgaatcaatttgtagcttccttgatgcacgagcttcagatct |
299 |
Q |
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| T |
14982909 |
tgatcttaatatgaaatgtagagtcatcttttgaattccgagcactagagatatttcttgaatcaatctgtagctaccttagtgcacgaactatagaatt |
14982810 |
T |
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| Q |
300 |
ggagatggatacttatcctacacttgatgaacttacaaacaaggtat |
346 |
Q |
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| T |
14982809 |
ggagatggctacttatcctgcactagatgaacttaccaccaaggtat |
14982763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 34437863 - 34437934
Alignment:
| Q |
1 |
ctggtgttccactgacagctctaacagctgagactgaggcaaccatggctgtgttgtgttgtcttgcaaaga |
72 |
Q |
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| T |
34437863 |
ctggtgttccactgacagctctaacagctgagactgaggcaaccatggctgggttgtgttgtcttgcaaaga |
34437934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 185
Target Start/End: Complemental strand, 2916843 - 2916747
Alignment:
| Q |
90 |
atccattggtatggaacattttattttccaaataaaaac-ccgagtgcgagccagactgaaaaattactttctttgttgcggaataagaagccttca |
185 |
Q |
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| T |
2916843 |
atccattagtatcgaatattttcttttccaagtgaaaacaccgcgtacgagcgagactgaaaaagtgctttctttgttgtggaataagaagccttca |
2916747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 185
Target Start/End: Original strand, 7708379 - 7708476
Alignment:
| Q |
90 |
atccattggtatggaacattttatttt-ccaaataaaaacc-cgagtgcgagccagactgaaaaattactttctttgttgcggaataagaagccttca |
185 |
Q |
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| T |
7708379 |
atccattagtatcgaacattttctttttccaagtgaaaacctcgcgtacgagcaagactgaaaaagtgctttctttgttgtggaataagaaaccttca |
7708476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 1187 - 1092
Alignment:
| Q |
90 |
atccattggtatggaacattttattttccaaataaaaaccc-gagtgcgagccagactgaaaaattactttctttgttgcggaataagaagccttc |
184 |
Q |
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| T |
1187 |
atccattagtatcgaatattttcttttccaagtgaaaaccccgcgtacgagcaagactgaaaaagtgctttctttgttgtggaataagaagccttc |
1092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 184
Target Start/End: Original strand, 83348 - 83443
Alignment:
| Q |
90 |
atccattggtatggaacattttattttccaaataaaaaccc-gagtgcgagccagactgaaaaattactttctttgttgcggaataagaagccttc |
184 |
Q |
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| T |
83348 |
atccattagtatcgaatattttcttttccaagtgaaaaccccgcgtacgagcaagactgaaaaagtgctttctttgttgtggaataagaagccttc |
83443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 18353178 - 18353083
Alignment:
| Q |
90 |
atccattggtatggaacattttattttccaaataaaaaccc-gagtgcgagccagactgaaaaattactttctttgttgcggaataagaagccttc |
184 |
Q |
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||||||| |||| ||| ||||| |||||||| | ||||||| | || ||||| ||||||||||| | |||||||||||| |||||||||||||||| |
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| T |
18353178 |
atccattagtatcgaatattttcttttccaagtgaaaaccccgcgtacgagcaagactgaaaaagtgctttctttgttgtggaataagaagccttc |
18353083 |
T |
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