View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1483_low_5 (Length: 309)
Name: NF1483_low_5
Description: NF1483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1483_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 37096080 - 37095772
Alignment:
| Q |
1 |
aaaaccatatacaattgaattcaaatattctatttaagatgaaggaagggtttcattactcaccaactaacataggatcaatatgttcnnnnnnncttgc |
100 |
Q |
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| T |
37096080 |
aaaaccatatacaattgaattcaaatattctatttaagatgaaggaagggtttcattactcaccaactaacataggatcaatatgttcaaaaaaacttgc |
37095981 |
T |
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| Q |
101 |
agaaactatcaaatagcaaagaataagcaccatccctttgaagtagtttgaagttccattctgcatttcgaaacaaagttcaagttgtaaggtttaaatg |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37095980 |
agaaactatcaaatagcaaagaataagcacaatccctttgaagtagtttgaagttccattctgcatttcgaaacaaagttcaagttgtaaggtttaaatg |
37095881 |
T |
|
| Q |
201 |
tgattatccacttgttattgatactatcatggcatatatatagccaattacacaagggattaattgtctctgttcttacttgtattacaagtaacgtgcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37095880 |
tgattatccacttgttattgatactatcatggcatatatatagccaattacacaagggattaattgtctctgttcttacttgtattacaagtaacgtgcc |
37095781 |
T |
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| Q |
301 |
aagtaagga |
309 |
Q |
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||||||||| |
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| T |
37095780 |
aagtaagga |
37095772 |
T |
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