View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1483_low_6 (Length: 280)
Name: NF1483_low_6
Description: NF1483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1483_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 23 - 249
Target Start/End: Original strand, 42723817 - 42724043
Alignment:
| Q |
23 |
atctttaacataacgactccaaccttttgtaagaacatagctttgactactattccaatacgaataccggaacctccaacacttacctgactcatcctcg |
122 |
Q |
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| T |
42723817 |
atctttaacataacgactccaaccttttgtaagaacatagctttgactactattccaatacgaataccggaacctccaacacttacctgactcatcctcg |
42723916 |
T |
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| Q |
123 |
aaactcagtaacaagcctttgatttcttctgagtctagtgggaaatatctctcagcatgttgttttggaataacgagtcggttcaacttccctacatcgc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42723917 |
aaactcagtaacaagcctttgatttcttctgagtctagtgggaaatatctctcagcatgttgttttggaataacgagtcggttcaacttccctacatcgc |
42724016 |
T |
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| Q |
223 |
ttggtgttaatggtttctcaaacatcg |
249 |
Q |
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||||||||||||||||||||||||||| |
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| T |
42724017 |
ttggtgttaatggtttctcaaacatcg |
42724043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 25691055 - 25690945
Alignment:
| Q |
23 |
atctttaacataacgactccaaccttttgtaagaacatagctttgactactattccaatacgaataccggaacctccaacacttacctgactcatcctcg |
122 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| || || ||||| | ||||||||| ||||||||||| || |
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| T |
25691055 |
atctttgacataacgactccaaccttttgttagaacatagctttgactactgttccaataagagtaacggaaacgccaacacttccctgactcatcttca |
25690956 |
T |
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| Q |
123 |
aaactcagtaa |
133 |
Q |
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||||| ||||| |
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| T |
25690955 |
aaacttagtaa |
25690945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 8775036 - 8775094
Alignment:
| Q |
24 |
tctttaacataacgactccaaccttttgtaagaacatagctttgactactattccaata |
82 |
Q |
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||||||||| |||| |||||||||||||| | |||||||||||| ||||| |||||||| |
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| T |
8775036 |
tctttaacaaaacggctccaaccttttgtcataacatagctttggctactgttccaata |
8775094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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