View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1483_low_7 (Length: 251)
Name: NF1483_low_7
Description: NF1483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1483_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 25890084 - 25889841
Alignment:
| Q |
16 |
acatcttcatctaagatgcataaaatctaatttcttcgaccaccaaagaaattttccatcaatattttgaggtccgtcaaattcttcttc---------t |
106 |
Q |
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| T |
25890084 |
acatattcatctaagatgcataaaatctaatttcttcgactaccaaagaaattttccatcaatattttgaggtccgtcaaattcttcttccacttcttct |
25889985 |
T |
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| Q |
107 |
tcttcagtannnnnnnnnagctccctcagtttccatggcatcgtagtgctccttgggattatctttcgtattaacattgaagggttttgtctggttgaca |
206 |
Q |
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| T |
25889984 |
tcttcagtatttttttt-agctccctcagtttccatggcatcgtagtgctccttgggattatctttcgtattaacattgaagggttttgtctggttggca |
25889886 |
T |
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| Q |
207 |
tcaagttgcttggagatttgtccgatttgaacttctaaacctttg |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25889885 |
tcaagttgcttggagatttgtccgatttgaacttctaaacctttg |
25889841 |
T |
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